Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19145

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19140 and AO356_19145 overlap by 4 nucleotidesAO356_19145 and AO356_19150 overlap by 4 nucleotidesAO356_19150 and AO356_19155 overlap by 8 nucleotides AO356_19140: AO356_19140 - cobyrinic acid a,c-diamide synthase, at 4,298,404 to 4,299,798 _19140 AO356_19145: AO356_19145 - 5,6-dimethylbenzimidazole synthase, at 4,299,795 to 4,300,445 _19145 AO356_19150: AO356_19150 - cobalamin biosynthesis protein CobD, at 4,300,442 to 4,301,350 _19150 AO356_19155: AO356_19155 - threonine-phosphate decarboxylase, at 4,301,343 to 4,302,335 _19155 Position (kb) 4299 4300 4301Strain fitness (log2 ratio) -3 -2 -1 0 1at 4298.929 kb on + strand, within AO356_19140at 4298.929 kb on + strand, within AO356_19140at 4299.051 kb on + strand, within AO356_19140at 4299.051 kb on + strand, within AO356_19140at 4299.052 kb on - strand, within AO356_19140at 4299.052 kb on - strand, within AO356_19140at 4299.173 kb on - strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.268 kb on + strand, within AO356_19140at 4299.319 kb on - strand, within AO356_19140at 4299.394 kb on + strand, within AO356_19140at 4299.394 kb on + strand, within AO356_19140at 4299.394 kb on + strand, within AO356_19140at 4299.395 kb on - strand, within AO356_19140at 4299.395 kb on - strand, within AO356_19140at 4299.395 kb on - strand, within AO356_19140at 4299.395 kb on - strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.541 kb on + strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.542 kb on - strand, within AO356_19140at 4299.592 kb on - strand, within AO356_19140at 4299.652 kb on + strand, within AO356_19140at 4299.652 kb on + strand, within AO356_19140at 4299.652 kb on + strand, within AO356_19140at 4299.652 kb on + strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.653 kb on - strand, within AO356_19140at 4299.838 kb on - strandat 4299.890 kb on - strand, within AO356_19145at 4300.353 kb on + strand, within AO356_19145at 4300.353 kb on + strand, within AO356_19145at 4300.416 kb on + strandat 4300.417 kb on - strandat 4300.417 kb on - strandat 4300.694 kb on + strand, within AO356_19150at 4300.694 kb on + strand, within AO356_19150at 4300.694 kb on + strand, within AO356_19150at 4300.694 kb on + strand, within AO356_19150at 4300.694 kb on + strand, within AO356_19150at 4300.695 kb on - strand, within AO356_19150at 4300.695 kb on - strand, within AO356_19150at 4300.695 kb on - strand, within AO356_19150at 4300.938 kb on - strand, within AO356_19150at 4300.952 kb on - strand, within AO356_19150at 4301.036 kb on + strand, within AO356_19150at 4301.036 kb on + strand, within AO356_19150at 4301.037 kb on - strand, within AO356_19150at 4301.037 kb on - strand, within AO356_19150at 4301.037 kb on - strand, within AO356_19150at 4301.037 kb on - strand, within AO356_19150at 4301.037 kb on - strand, within AO356_19150at 4301.066 kb on + strand, within AO356_19150at 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.342 kb on + strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strandat 4301.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,298,929 + AO356_19140 0.38 -1.0
4,298,929 + AO356_19140 0.38 -0.6
4,299,051 + AO356_19140 0.46 -1.3
4,299,051 + AO356_19140 0.46 +0.1
4,299,052 - AO356_19140 0.46 -1.7
4,299,052 - AO356_19140 0.46 -1.4
4,299,173 - AO356_19140 0.55 -0.3
4,299,268 + AO356_19140 0.62 -0.8
4,299,268 + AO356_19140 0.62 -0.4
4,299,268 + AO356_19140 0.62 -0.3
4,299,268 + AO356_19140 0.62 +0.4
4,299,268 + AO356_19140 0.62 -0.1
4,299,268 + AO356_19140 0.62 -0.9
4,299,319 - AO356_19140 0.66 +0.7
4,299,394 + AO356_19140 0.71 +0.3
4,299,394 + AO356_19140 0.71 +0.6
4,299,394 + AO356_19140 0.71 +0.2
4,299,395 - AO356_19140 0.71 +0.0
4,299,395 - AO356_19140 0.71 -1.6
4,299,395 - AO356_19140 0.71 -1.3
4,299,395 - AO356_19140 0.71 -0.2
4,299,541 + AO356_19140 0.82 -0.4
4,299,541 + AO356_19140 0.82 -2.3
4,299,541 + AO356_19140 0.82 +0.5
4,299,541 + AO356_19140 0.82 -0.0
4,299,541 + AO356_19140 0.82 -0.4
4,299,541 + AO356_19140 0.82 -1.1
4,299,541 + AO356_19140 0.82 +0.9
4,299,541 + AO356_19140 0.82 -0.4
4,299,541 + AO356_19140 0.82 -0.4
4,299,541 + AO356_19140 0.82 -0.6
4,299,541 + AO356_19140 0.82 -0.2
4,299,542 - AO356_19140 0.82 -0.9
4,299,542 - AO356_19140 0.82 -0.1
4,299,542 - AO356_19140 0.82 -0.6
4,299,542 - AO356_19140 0.82 +0.7
4,299,542 - AO356_19140 0.82 +0.4
4,299,542 - AO356_19140 0.82 +0.1
4,299,542 - AO356_19140 0.82 -1.2
4,299,542 - AO356_19140 0.82 -1.1
4,299,542 - AO356_19140 0.82 -0.9
4,299,542 - AO356_19140 0.82 -0.3
4,299,542 - AO356_19140 0.82 +1.4
4,299,542 - AO356_19140 0.82 +0.4
4,299,542 - AO356_19140 0.82 +0.6
4,299,592 - AO356_19140 0.85 -0.4
4,299,652 + AO356_19140 0.89 -0.5
4,299,652 + AO356_19140 0.89 +0.8
4,299,652 + AO356_19140 0.89 -1.9
4,299,652 + AO356_19140 0.89 -0.6
4,299,653 - AO356_19140 0.90 -0.5
4,299,653 - AO356_19140 0.90 -0.4
4,299,653 - AO356_19140 0.90 -0.5
4,299,653 - AO356_19140 0.90 -0.7
4,299,653 - AO356_19140 0.90 -1.6
4,299,653 - AO356_19140 0.90 -0.4
4,299,653 - AO356_19140 0.90 -0.4
4,299,653 - AO356_19140 0.90 -0.4
4,299,838 - +0.0
4,299,890 - AO356_19145 0.15 -0.7
4,300,353 + AO356_19145 0.86 -1.3
4,300,353 + AO356_19145 0.86 -0.3
4,300,416 + -0.9
4,300,417 - +0.9
4,300,417 - -0.8
4,300,694 + AO356_19150 0.28 -0.3
4,300,694 + AO356_19150 0.28 -0.7
4,300,694 + AO356_19150 0.28 -1.0
4,300,694 + AO356_19150 0.28 +1.0
4,300,694 + AO356_19150 0.28 +0.1
4,300,695 - AO356_19150 0.28 -1.1
4,300,695 - AO356_19150 0.28 +0.1
4,300,695 - AO356_19150 0.28 -0.7
4,300,938 - AO356_19150 0.55 -2.1
4,300,952 - AO356_19150 0.56 +1.4
4,301,036 + AO356_19150 0.65 +0.4
4,301,036 + AO356_19150 0.65 +0.4
4,301,037 - AO356_19150 0.65 +0.1
4,301,037 - AO356_19150 0.65 -2.5
4,301,037 - AO356_19150 0.65 -0.1
4,301,037 - AO356_19150 0.65 -0.3
4,301,037 - AO356_19150 0.65 -1.2
4,301,066 + AO356_19150 0.69 -3.6
4,301,342 + +0.4
4,301,342 + -0.2
4,301,342 + -1.2
4,301,342 + -1.4
4,301,342 + +0.4
4,301,342 + +0.7
4,301,342 + -1.1
4,301,342 + +0.5
4,301,342 + +0.1
4,301,343 - +0.6
4,301,343 - +0.4
4,301,343 - -1.0
4,301,343 - +0.4
4,301,343 - -2.9
4,301,343 - +0.4

Or see this region's nucleotide sequence