Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17815

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17810 and AO356_17815 are separated by 452 nucleotidesAO356_17815 and AO356_17820 overlap by 8 nucleotidesAO356_17820 and AO356_17825 are separated by 28 nucleotides AO356_17810: AO356_17810 - fumarate hydratase, at 4,018,060 to 4,019,583 _17810 AO356_17815: AO356_17815 - hypothetical protein, at 4,020,036 to 4,021,142 _17815 AO356_17820: AO356_17820 - hypothetical protein, at 4,021,135 to 4,022,070 _17820 AO356_17825: AO356_17825 - enoyl-CoA hydratase, at 4,022,099 to 4,022,848 _17825 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4019.519 kb on + strandat 4019.620 kb on - strandat 4019.620 kb on - strandat 4019.664 kb on + strandat 4019.665 kb on - strandat 4019.665 kb on - strandat 4019.665 kb on - strandat 4019.697 kb on - strandat 4019.713 kb on - strandat 4019.713 kb on - strandat 4019.714 kb on + strandat 4019.715 kb on - strandat 4019.746 kb on + strandat 4019.747 kb on - strandat 4019.747 kb on - strandat 4019.828 kb on - strandat 4019.861 kb on + strandat 4019.862 kb on - strandat 4019.862 kb on - strandat 4019.862 kb on - strandat 4019.888 kb on - strandat 4019.959 kb on - strandat 4019.959 kb on - strandat 4019.968 kb on + strandat 4019.993 kb on - strandat 4019.993 kb on - strandat 4019.993 kb on - strandat 4020.096 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.144 kb on + strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.145 kb on - strandat 4020.221 kb on + strand, within AO356_17815at 4020.221 kb on + strand, within AO356_17815at 4020.221 kb on + strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.222 kb on - strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.348 kb on + strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.349 kb on - strand, within AO356_17815at 4020.456 kb on + strand, within AO356_17815at 4020.456 kb on + strand, within AO356_17815at 4020.457 kb on - strand, within AO356_17815at 4020.457 kb on - strand, within AO356_17815at 4020.480 kb on - strand, within AO356_17815at 4020.480 kb on - strand, within AO356_17815at 4020.538 kb on - strand, within AO356_17815at 4020.547 kb on - strand, within AO356_17815at 4020.547 kb on - strand, within AO356_17815at 4020.865 kb on + strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4020.866 kb on - strand, within AO356_17815at 4021.080 kb on + strandat 4021.185 kb on + strandat 4021.228 kb on + strandat 4021.228 kb on + strandat 4021.229 kb on - strand, within AO356_17820at 4021.687 kb on + strand, within AO356_17820at 4021.687 kb on + strand, within AO356_17820at 4021.687 kb on + strand, within AO356_17820at 4021.687 kb on + strand, within AO356_17820at 4021.688 kb on - strand, within AO356_17820at 4021.688 kb on - strand, within AO356_17820at 4021.807 kb on - strand, within AO356_17820at 4021.807 kb on - strand, within AO356_17820at 4021.807 kb on - strand, within AO356_17820at 4021.837 kb on + strand, within AO356_17820at 4021.838 kb on - strand, within AO356_17820at 4021.838 kb on - strand, within AO356_17820at 4021.964 kb on + strand, within AO356_17820at 4021.964 kb on + strand, within AO356_17820at 4021.964 kb on + strand, within AO356_17820at 4021.964 kb on + strand, within AO356_17820at 4021.965 kb on - strand, within AO356_17820at 4021.965 kb on - strand, within AO356_17820at 4022.011 kb on + strandat 4022.011 kb on + strandat 4022.012 kb on - strandat 4022.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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4,019,519 + +1.4
4,019,620 - +0.6
4,019,620 - -0.0
4,019,664 + -0.2
4,019,665 - -0.5
4,019,665 - -0.8
4,019,665 - +0.3
4,019,697 - +0.5
4,019,713 - -1.2
4,019,713 - -0.4
4,019,714 + -1.2
4,019,715 - +0.4
4,019,746 + +0.4
4,019,747 - +0.6
4,019,747 - -0.9
4,019,828 - +1.2
4,019,861 + -2.4
4,019,862 - +1.6
4,019,862 - +0.2
4,019,862 - +0.5
4,019,888 - +0.7
4,019,959 - +1.2
4,019,959 - +1.2
4,019,968 + -1.2
4,019,993 - +1.4
4,019,993 - +0.6
4,019,993 - +1.1
4,020,096 + +1.9
4,020,144 + +1.3
4,020,144 + +1.4
4,020,144 + +1.6
4,020,144 + +0.2
4,020,144 + +3.0
4,020,145 - +0.1
4,020,145 - +1.5
4,020,145 - +1.7
4,020,145 - +1.5
4,020,145 - +1.4
4,020,221 + AO356_17815 0.17 +1.1
4,020,221 + AO356_17815 0.17 +1.9
4,020,221 + AO356_17815 0.17 +1.1
4,020,222 - AO356_17815 0.17 +1.1
4,020,222 - AO356_17815 0.17 +0.6
4,020,222 - AO356_17815 0.17 +2.1
4,020,348 + AO356_17815 0.28 +2.4
4,020,348 + AO356_17815 0.28 +1.3
4,020,348 + AO356_17815 0.28 +1.9
4,020,349 - AO356_17815 0.28 +1.1
4,020,349 - AO356_17815 0.28 +0.5
4,020,349 - AO356_17815 0.28 +1.7
4,020,456 + AO356_17815 0.38 +1.6
4,020,456 + AO356_17815 0.38 +2.4
4,020,457 - AO356_17815 0.38 +1.5
4,020,457 - AO356_17815 0.38 +1.3
4,020,480 - AO356_17815 0.40 +1.0
4,020,480 - AO356_17815 0.40 +1.2
4,020,538 - AO356_17815 0.45 +2.7
4,020,547 - AO356_17815 0.46 +1.9
4,020,547 - AO356_17815 0.46 +1.1
4,020,865 + AO356_17815 0.75 +1.9
4,020,866 - AO356_17815 0.75 +1.3
4,020,866 - AO356_17815 0.75 +1.4
4,020,866 - AO356_17815 0.75 +1.0
4,020,866 - AO356_17815 0.75 +1.0
4,020,866 - AO356_17815 0.75 +0.9
4,020,866 - AO356_17815 0.75 +1.2
4,021,080 + +0.6
4,021,185 + +1.8
4,021,228 + -0.0
4,021,228 + +0.3
4,021,229 - AO356_17820 0.10 +3.3
4,021,687 + AO356_17820 0.59 -0.1
4,021,687 + AO356_17820 0.59 +0.0
4,021,687 + AO356_17820 0.59 +0.1
4,021,687 + AO356_17820 0.59 -1.2
4,021,688 - AO356_17820 0.59 +1.0
4,021,688 - AO356_17820 0.59 -0.2
4,021,807 - AO356_17820 0.72 +0.9
4,021,807 - AO356_17820 0.72 +0.1
4,021,807 - AO356_17820 0.72 +0.0
4,021,837 + AO356_17820 0.75 +0.2
4,021,838 - AO356_17820 0.75 -0.2
4,021,838 - AO356_17820 0.75 -1.1
4,021,964 + AO356_17820 0.89 +0.5
4,021,964 + AO356_17820 0.89 +0.0
4,021,964 + AO356_17820 0.89 +0.5
4,021,964 + AO356_17820 0.89 +1.6
4,021,965 - AO356_17820 0.89 +0.6
4,021,965 - AO356_17820 0.89 +0.1
4,022,011 + +0.5
4,022,011 + -0.4
4,022,012 - -0.6
4,022,012 - +1.1

Or see this region's nucleotide sequence