Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_12720 and AO356_12725 overlap by 4 nucleotides AO356_12725 and AO356_12730 are separated by 2 nucleotides AO356_12730 and AO356_12735 are separated by 13 nucleotides
AO356_12720: AO356_12720 - HAD family hydrolase, at 2,900,103 to 2,900,807
_12720
AO356_12725: AO356_12725 - recombinase XerC, at 2,900,804 to 2,901,703
_12725
AO356_12730: AO356_12730 - hypothetical protein, at 2,901,706 to 2,902,428
_12730
AO356_12735: AO356_12735 - diaminopimelate epimerase, at 2,902,442 to 2,903,272
_12735
Position (kb)
2900
2901
2902 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2899.829 kb on + strand at 2900.114 kb on + strand at 2900.114 kb on + strand at 2900.383 kb on + strand, within AO356_12720 at 2900.383 kb on + strand, within AO356_12720 at 2900.384 kb on - strand, within AO356_12720 at 2900.384 kb on - strand, within AO356_12720 at 2900.727 kb on + strand, within AO356_12720 at 2900.727 kb on + strand, within AO356_12720 at 2900.727 kb on + strand, within AO356_12720 at 2900.727 kb on + strand, within AO356_12720 at 2900.728 kb on - strand, within AO356_12720 at 2900.728 kb on - strand, within AO356_12720 at 2900.853 kb on + strand at 2900.854 kb on - strand at 2900.854 kb on - strand at 2900.854 kb on - strand at 2900.889 kb on + strand at 2901.244 kb on + strand, within AO356_12725 at 2901.282 kb on + strand, within AO356_12725 at 2901.283 kb on - strand, within AO356_12725 at 2901.283 kb on - strand, within AO356_12725 at 2901.456 kb on + strand, within AO356_12725 at 2901.456 kb on + strand, within AO356_12725 at 2901.456 kb on + strand, within AO356_12725 at 2901.457 kb on - strand, within AO356_12725 at 2901.457 kb on - strand, within AO356_12725 at 2901.457 kb on - strand, within AO356_12725 at 2901.457 kb on - strand, within AO356_12725 at 2901.457 kb on - strand, within AO356_12725 at 2901.463 kb on - strand, within AO356_12725 at 2901.463 kb on - strand, within AO356_12725 at 2901.463 kb on - strand, within AO356_12725 at 2901.605 kb on + strand, within AO356_12725 at 2901.628 kb on - strand at 2901.770 kb on + strand at 2901.770 kb on + strand at 2901.770 kb on + strand at 2901.770 kb on + strand at 2901.771 kb on - strand at 2901.771 kb on - strand at 2901.771 kb on - strand at 2901.771 kb on - strand at 2901.803 kb on + strand, within AO356_12730 at 2901.804 kb on - strand, within AO356_12730 at 2901.804 kb on - strand, within AO356_12730 at 2901.835 kb on + strand, within AO356_12730 at 2901.835 kb on + strand, within AO356_12730 at 2901.836 kb on - strand, within AO356_12730 at 2902.349 kb on + strand, within AO356_12730 at 2902.350 kb on - strand, within AO356_12730 at 2902.464 kb on + strand at 2902.464 kb on + strand at 2902.465 kb on - strand at 2902.466 kb on + strand at 2902.466 kb on + strand at 2902.467 kb on - strand at 2902.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 2,899,829 + -0.3 2,900,114 + +0.4 2,900,114 + +0.8 2,900,383 + AO356_12720 0.40 -0.4 2,900,383 + AO356_12720 0.40 -1.8 2,900,384 - AO356_12720 0.40 +0.5 2,900,384 - AO356_12720 0.40 -0.3 2,900,727 + AO356_12720 0.89 -0.9 2,900,727 + AO356_12720 0.89 -0.0 2,900,727 + AO356_12720 0.89 +0.1 2,900,727 + AO356_12720 0.89 -0.2 2,900,728 - AO356_12720 0.89 +0.8 2,900,728 - AO356_12720 0.89 +0.4 2,900,853 + -0.4 2,900,854 - +0.6 2,900,854 - -1.2 2,900,854 - -1.3 2,900,889 + -2.9 2,901,244 + AO356_12725 0.49 -0.1 2,901,282 + AO356_12725 0.53 +0.6 2,901,283 - AO356_12725 0.53 -0.7 2,901,283 - AO356_12725 0.53 -1.5 2,901,456 + AO356_12725 0.72 +2.2 2,901,456 + AO356_12725 0.72 -1.2 2,901,456 + AO356_12725 0.72 -1.7 2,901,457 - AO356_12725 0.73 -2.2 2,901,457 - AO356_12725 0.73 -1.5 2,901,457 - AO356_12725 0.73 -0.5 2,901,457 - AO356_12725 0.73 -0.6 2,901,457 - AO356_12725 0.73 -2.7 2,901,463 - AO356_12725 0.73 -0.6 2,901,463 - AO356_12725 0.73 -0.5 2,901,463 - AO356_12725 0.73 +1.0 2,901,605 + AO356_12725 0.89 -0.5 2,901,628 - -3.5 2,901,770 + -1.2 2,901,770 + +1.8 2,901,770 + +0.3 2,901,770 + -0.1 2,901,771 - -0.5 2,901,771 - -0.6 2,901,771 - -0.6 2,901,771 - -1.6 2,901,803 + AO356_12730 0.13 -1.2 2,901,804 - AO356_12730 0.14 -0.2 2,901,804 - AO356_12730 0.14 +0.5 2,901,835 + AO356_12730 0.18 +0.3 2,901,835 + AO356_12730 0.18 -2.0 2,901,836 - AO356_12730 0.18 -0.3 2,902,349 + AO356_12730 0.89 -0.8 2,902,350 - AO356_12730 0.89 +0.7 2,902,464 + +1.4 2,902,464 + +0.5 2,902,465 - +0.6 2,902,466 + +0.1 2,902,466 + -1.0 2,902,467 - +0.5 2,902,467 - +1.8
Or see this region's nucleotide sequence