Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12725

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12720 and AO356_12725 overlap by 4 nucleotidesAO356_12725 and AO356_12730 are separated by 2 nucleotidesAO356_12730 and AO356_12735 are separated by 13 nucleotides AO356_12720: AO356_12720 - HAD family hydrolase, at 2,900,103 to 2,900,807 _12720 AO356_12725: AO356_12725 - recombinase XerC, at 2,900,804 to 2,901,703 _12725 AO356_12730: AO356_12730 - hypothetical protein, at 2,901,706 to 2,902,428 _12730 AO356_12735: AO356_12735 - diaminopimelate epimerase, at 2,902,442 to 2,903,272 _12735 Position (kb) 2900 2901 2902Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2899.829 kb on + strandat 2900.114 kb on + strandat 2900.114 kb on + strandat 2900.383 kb on + strand, within AO356_12720at 2900.383 kb on + strand, within AO356_12720at 2900.384 kb on - strand, within AO356_12720at 2900.384 kb on - strand, within AO356_12720at 2900.727 kb on + strand, within AO356_12720at 2900.727 kb on + strand, within AO356_12720at 2900.727 kb on + strand, within AO356_12720at 2900.727 kb on + strand, within AO356_12720at 2900.728 kb on - strand, within AO356_12720at 2900.728 kb on - strand, within AO356_12720at 2900.853 kb on + strandat 2900.854 kb on - strandat 2900.854 kb on - strandat 2900.854 kb on - strandat 2900.889 kb on + strandat 2901.244 kb on + strand, within AO356_12725at 2901.282 kb on + strand, within AO356_12725at 2901.283 kb on - strand, within AO356_12725at 2901.283 kb on - strand, within AO356_12725at 2901.456 kb on + strand, within AO356_12725at 2901.456 kb on + strand, within AO356_12725at 2901.456 kb on + strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.457 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.463 kb on - strand, within AO356_12725at 2901.605 kb on + strand, within AO356_12725at 2901.628 kb on - strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.770 kb on + strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.771 kb on - strandat 2901.803 kb on + strand, within AO356_12730at 2901.804 kb on - strand, within AO356_12730at 2901.804 kb on - strand, within AO356_12730at 2901.835 kb on + strand, within AO356_12730at 2901.835 kb on + strand, within AO356_12730at 2901.836 kb on - strand, within AO356_12730at 2902.349 kb on + strand, within AO356_12730at 2902.350 kb on - strand, within AO356_12730at 2902.464 kb on + strandat 2902.464 kb on + strandat 2902.465 kb on - strandat 2902.466 kb on + strandat 2902.466 kb on + strandat 2902.467 kb on - strandat 2902.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,899,829 + -0.3
2,900,114 + +0.4
2,900,114 + +0.8
2,900,383 + AO356_12720 0.40 -0.4
2,900,383 + AO356_12720 0.40 -1.8
2,900,384 - AO356_12720 0.40 +0.5
2,900,384 - AO356_12720 0.40 -0.3
2,900,727 + AO356_12720 0.89 -0.9
2,900,727 + AO356_12720 0.89 -0.0
2,900,727 + AO356_12720 0.89 +0.1
2,900,727 + AO356_12720 0.89 -0.2
2,900,728 - AO356_12720 0.89 +0.8
2,900,728 - AO356_12720 0.89 +0.4
2,900,853 + -0.4
2,900,854 - +0.6
2,900,854 - -1.2
2,900,854 - -1.3
2,900,889 + -2.9
2,901,244 + AO356_12725 0.49 -0.1
2,901,282 + AO356_12725 0.53 +0.6
2,901,283 - AO356_12725 0.53 -0.7
2,901,283 - AO356_12725 0.53 -1.5
2,901,456 + AO356_12725 0.72 +2.2
2,901,456 + AO356_12725 0.72 -1.2
2,901,456 + AO356_12725 0.72 -1.7
2,901,457 - AO356_12725 0.73 -2.2
2,901,457 - AO356_12725 0.73 -1.5
2,901,457 - AO356_12725 0.73 -0.5
2,901,457 - AO356_12725 0.73 -0.6
2,901,457 - AO356_12725 0.73 -2.7
2,901,463 - AO356_12725 0.73 -0.6
2,901,463 - AO356_12725 0.73 -0.5
2,901,463 - AO356_12725 0.73 +1.0
2,901,605 + AO356_12725 0.89 -0.5
2,901,628 - -3.5
2,901,770 + -1.2
2,901,770 + +1.8
2,901,770 + +0.3
2,901,770 + -0.1
2,901,771 - -0.5
2,901,771 - -0.6
2,901,771 - -0.6
2,901,771 - -1.6
2,901,803 + AO356_12730 0.13 -1.2
2,901,804 - AO356_12730 0.14 -0.2
2,901,804 - AO356_12730 0.14 +0.5
2,901,835 + AO356_12730 0.18 +0.3
2,901,835 + AO356_12730 0.18 -2.0
2,901,836 - AO356_12730 0.18 -0.3
2,902,349 + AO356_12730 0.89 -0.8
2,902,350 - AO356_12730 0.89 +0.7
2,902,464 + +1.4
2,902,464 + +0.5
2,902,465 - +0.6
2,902,466 + +0.1
2,902,466 + -1.0
2,902,467 - +0.5
2,902,467 - +1.8

Or see this region's nucleotide sequence