Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10680

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10670 and AO356_10675 are separated by 3 nucleotidesAO356_10675 and AO356_10680 are separated by 12 nucleotidesAO356_10680 and AO356_10685 are separated by 175 nucleotides AO356_10670: AO356_10670 - sulfate ABC transporter ATP-binding protein, at 2,431,487 to 2,432,476 _10670 AO356_10675: AO356_10675 - sulfate ABC transporter permease, at 2,432,480 to 2,433,349 _10675 AO356_10680: AO356_10680 - sulfate ABC transporter permease, at 2,433,362 to 2,434,180 _10680 AO356_10685: AO356_10685 - ABC transporter permease, at 2,434,356 to 2,435,369 _10685 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -2 -1 0 1 2at 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.481 kb on + strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.482 kb on - strandat 2432.604 kb on + strand, within AO356_10675at 2432.604 kb on + strand, within AO356_10675at 2432.604 kb on + strand, within AO356_10675at 2432.604 kb on + strand, within AO356_10675at 2432.604 kb on + strand, within AO356_10675at 2432.605 kb on - strand, within AO356_10675at 2432.605 kb on - strand, within AO356_10675at 2432.605 kb on - strand, within AO356_10675at 2432.613 kb on + strand, within AO356_10675at 2432.613 kb on + strand, within AO356_10675at 2432.613 kb on + strand, within AO356_10675at 2432.614 kb on - strand, within AO356_10675at 2432.614 kb on - strand, within AO356_10675at 2432.614 kb on - strand, within AO356_10675at 2432.614 kb on - strand, within AO356_10675at 2432.710 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.727 kb on + strand, within AO356_10675at 2432.728 kb on - strand, within AO356_10675at 2432.728 kb on - strand, within AO356_10675at 2432.728 kb on - strand, within AO356_10675at 2432.728 kb on - strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.979 kb on + strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2432.980 kb on - strand, within AO356_10675at 2433.060 kb on + strand, within AO356_10675at 2433.060 kb on + strand, within AO356_10675at 2433.060 kb on + strand, within AO356_10675at 2433.061 kb on - strand, within AO356_10675at 2433.061 kb on - strand, within AO356_10675at 2433.061 kb on - strand, within AO356_10675at 2433.061 kb on - strand, within AO356_10675at 2433.061 kb on - strand, within AO356_10675at 2433.334 kb on + strandat 2433.335 kb on - strandat 2433.364 kb on - strandat 2433.364 kb on - strandat 2433.364 kb on - strandat 2433.460 kb on - strand, within AO356_10680at 2433.465 kb on + strand, within AO356_10680at 2433.466 kb on - strand, within AO356_10680at 2433.549 kb on + strand, within AO356_10680at 2433.550 kb on - strand, within AO356_10680at 2433.550 kb on - strand, within AO356_10680at 2433.772 kb on - strand, within AO356_10680at 2433.772 kb on - strand, within AO356_10680at 2433.772 kb on - strand, within AO356_10680at 2433.772 kb on - strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.828 kb on + strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.829 kb on - strand, within AO356_10680at 2433.921 kb on + strand, within AO356_10680at 2433.921 kb on + strand, within AO356_10680at 2433.922 kb on - strand, within AO356_10680at 2433.949 kb on + strand, within AO356_10680at 2433.950 kb on - strand, within AO356_10680at 2433.978 kb on + strand, within AO356_10680at 2433.978 kb on + strand, within AO356_10680at 2434.094 kb on + strand, within AO356_10680at 2434.094 kb on + strand, within AO356_10680at 2434.094 kb on + strand, within AO356_10680at 2434.094 kb on + strand, within AO356_10680at 2434.095 kb on - strand, within AO356_10680at 2434.095 kb on - strand, within AO356_10680at 2434.095 kb on - strand, within AO356_10680at 2434.116 kb on + strandat 2434.116 kb on + strandat 2434.116 kb on + strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.117 kb on - strandat 2434.128 kb on + strandat 2434.129 kb on - strandat 2434.180 kb on + strandat 2434.180 kb on + strandat 2434.180 kb on + strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.181 kb on - strandat 2434.343 kb on + strandat 2434.343 kb on + strandat 2434.344 kb on - strandat 2434.357 kb on + strandat 2434.357 kb on + strandat 2434.357 kb on + strandat 2434.357 kb on + strandat 2434.357 kb on + strandat 2434.357 kb on + strandat 2434.358 kb on - strandat 2434.358 kb on - strandat 2434.369 kb on + strandat 2434.369 kb on + strandat 2434.369 kb on + strandat 2434.370 kb on - strandat 2434.370 kb on - strandat 2434.370 kb on - strandat 2434.480 kb on + strand, within AO356_10685at 2434.480 kb on + strand, within AO356_10685at 2434.480 kb on + strand, within AO356_10685at 2434.480 kb on + strand, within AO356_10685at 2434.480 kb on + strand, within AO356_10685at 2434.480 kb on + strand, within AO356_10685at 2434.481 kb on - strand, within AO356_10685at 2434.481 kb on - strand, within AO356_10685at 2434.481 kb on - strand, within AO356_10685at 2434.481 kb on - strand, within AO356_10685at 2434.481 kb on - strand, within AO356_10685at 2434.513 kb on + strand, within AO356_10685at 2434.513 kb on + strand, within AO356_10685at 2434.517 kb on - strand, within AO356_10685at 2434.552 kb on + strand, within AO356_10685at 2434.552 kb on + strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.553 kb on - strand, within AO356_10685at 2434.567 kb on + strand, within AO356_10685at 2434.568 kb on - strand, within AO356_10685at 2434.568 kb on - strand, within AO356_10685at 2434.760 kb on + strand, within AO356_10685at 2434.760 kb on + strand, within AO356_10685at 2434.760 kb on + strand, within AO356_10685at 2434.760 kb on + strand, within AO356_10685at 2434.760 kb on + strand, within AO356_10685at 2434.761 kb on - strand, within AO356_10685at 2434.822 kb on + strand, within AO356_10685at 2434.822 kb on + strand, within AO356_10685at 2434.822 kb on + strand, within AO356_10685at 2434.823 kb on - strand, within AO356_10685at 2434.823 kb on - strand, within AO356_10685at 2434.823 kb on - strand, within AO356_10685at 2434.823 kb on - strand, within AO356_10685at 2434.823 kb on - strand, within AO356_10685at 2435.017 kb on + strand, within AO356_10685at 2435.017 kb on + strand, within AO356_10685at 2435.018 kb on - strand, within AO356_10685at 2435.018 kb on - strand, within AO356_10685at 2435.018 kb on - strand, within AO356_10685at 2435.018 kb on - strand, within AO356_10685at 2435.018 kb on - strand, within AO356_10685

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,432,481 + -0.2
2,432,481 + +0.4
2,432,481 + -0.5
2,432,481 + -1.0
2,432,481 + +0.5
2,432,481 + +1.3
2,432,481 + -0.6
2,432,481 + +0.1
2,432,482 - -1.4
2,432,482 - +0.3
2,432,482 - +0.3
2,432,482 - +1.2
2,432,482 - +0.5
2,432,482 - +0.3
2,432,482 - -0.7
2,432,482 - -0.1
2,432,482 - -0.5
2,432,482 - +0.6
2,432,604 + AO356_10675 0.14 -0.1
2,432,604 + AO356_10675 0.14 +0.0
2,432,604 + AO356_10675 0.14 -0.2
2,432,604 + AO356_10675 0.14 -0.2
2,432,604 + AO356_10675 0.14 +0.0
2,432,605 - AO356_10675 0.14 -0.3
2,432,605 - AO356_10675 0.14 -1.7
2,432,605 - AO356_10675 0.14 +0.1
2,432,613 + AO356_10675 0.15 -1.4
2,432,613 + AO356_10675 0.15 +1.4
2,432,613 + AO356_10675 0.15 -0.5
2,432,614 - AO356_10675 0.15 -0.3
2,432,614 - AO356_10675 0.15 -0.2
2,432,614 - AO356_10675 0.15 -0.8
2,432,614 - AO356_10675 0.15 +1.0
2,432,710 + AO356_10675 0.26 +1.1
2,432,727 + AO356_10675 0.28 +0.2
2,432,727 + AO356_10675 0.28 -0.2
2,432,727 + AO356_10675 0.28 -0.6
2,432,727 + AO356_10675 0.28 +0.4
2,432,727 + AO356_10675 0.28 +2.3
2,432,727 + AO356_10675 0.28 +0.8
2,432,727 + AO356_10675 0.28 +1.9
2,432,728 - AO356_10675 0.29 -0.6
2,432,728 - AO356_10675 0.29 -0.5
2,432,728 - AO356_10675 0.29 -1.0
2,432,728 - AO356_10675 0.29 +0.8
2,432,979 + AO356_10675 0.57 -0.3
2,432,979 + AO356_10675 0.57 +0.8
2,432,979 + AO356_10675 0.57 -0.2
2,432,979 + AO356_10675 0.57 +0.1
2,432,979 + AO356_10675 0.57 -1.1
2,432,979 + AO356_10675 0.57 +0.6
2,432,979 + AO356_10675 0.57 +0.6
2,432,979 + AO356_10675 0.57 -0.8
2,432,979 + AO356_10675 0.57 +0.1
2,432,979 + AO356_10675 0.57 +0.3
2,432,979 + AO356_10675 0.57 -2.2
2,432,979 + AO356_10675 0.57 -1.3
2,432,979 + AO356_10675 0.57 -0.1
2,432,979 + AO356_10675 0.57 -0.4
2,432,979 + AO356_10675 0.57 +0.6
2,432,979 + AO356_10675 0.57 +0.5
2,432,979 + AO356_10675 0.57 -0.2
2,432,980 - AO356_10675 0.57 +0.4
2,432,980 - AO356_10675 0.57 +0.7
2,432,980 - AO356_10675 0.57 +1.2
2,432,980 - AO356_10675 0.57 +0.3
2,432,980 - AO356_10675 0.57 -0.2
2,432,980 - AO356_10675 0.57 -0.8
2,432,980 - AO356_10675 0.57 +0.4
2,432,980 - AO356_10675 0.57 -0.6
2,432,980 - AO356_10675 0.57 -0.3
2,432,980 - AO356_10675 0.57 +1.8
2,432,980 - AO356_10675 0.57 +1.1
2,432,980 - AO356_10675 0.57 -0.6
2,432,980 - AO356_10675 0.57 +0.1
2,432,980 - AO356_10675 0.57 +0.0
2,432,980 - AO356_10675 0.57 +0.7
2,432,980 - AO356_10675 0.57 +0.0
2,433,060 + AO356_10675 0.67 +0.5
2,433,060 + AO356_10675 0.67 +0.4
2,433,060 + AO356_10675 0.67 +0.2
2,433,061 - AO356_10675 0.67 +0.6
2,433,061 - AO356_10675 0.67 +1.0
2,433,061 - AO356_10675 0.67 +1.0
2,433,061 - AO356_10675 0.67 +0.9
2,433,061 - AO356_10675 0.67 -0.3
2,433,334 + +0.5
2,433,335 - +0.0
2,433,364 - -0.1
2,433,364 - -0.7
2,433,364 - -0.1
2,433,460 - AO356_10680 0.12 +0.4
2,433,465 + AO356_10680 0.13 +0.7
2,433,466 - AO356_10680 0.13 +0.3
2,433,549 + AO356_10680 0.23 -0.0
2,433,550 - AO356_10680 0.23 -0.9
2,433,550 - AO356_10680 0.23 -0.6
2,433,772 - AO356_10680 0.50 -0.7
2,433,772 - AO356_10680 0.50 -1.1
2,433,772 - AO356_10680 0.50 +0.5
2,433,772 - AO356_10680 0.50 -0.7
2,433,828 + AO356_10680 0.57 -0.1
2,433,828 + AO356_10680 0.57 -0.7
2,433,828 + AO356_10680 0.57 -0.0
2,433,828 + AO356_10680 0.57 -0.4
2,433,828 + AO356_10680 0.57 +0.6
2,433,828 + AO356_10680 0.57 +0.1
2,433,829 - AO356_10680 0.57 -0.3
2,433,829 - AO356_10680 0.57 -0.9
2,433,829 - AO356_10680 0.57 +1.2
2,433,829 - AO356_10680 0.57 +0.7
2,433,829 - AO356_10680 0.57 +0.4
2,433,829 - AO356_10680 0.57 -1.6
2,433,921 + AO356_10680 0.68 -0.2
2,433,921 + AO356_10680 0.68 -0.3
2,433,922 - AO356_10680 0.68 -0.1
2,433,949 + AO356_10680 0.72 +0.1
2,433,950 - AO356_10680 0.72 -0.7
2,433,978 + AO356_10680 0.75 +2.1
2,433,978 + AO356_10680 0.75 -0.3
2,434,094 + AO356_10680 0.89 +1.3
2,434,094 + AO356_10680 0.89 +0.1
2,434,094 + AO356_10680 0.89 +1.3
2,434,094 + AO356_10680 0.89 -0.5
2,434,095 - AO356_10680 0.89 +0.2
2,434,095 - AO356_10680 0.89 -1.2
2,434,095 - AO356_10680 0.89 +0.3
2,434,116 + -0.1
2,434,116 + +0.5
2,434,116 + -0.2
2,434,117 - +0.5
2,434,117 - +0.5
2,434,117 - +0.2
2,434,117 - +0.7
2,434,117 - +0.2
2,434,117 - +0.5
2,434,117 - +0.9
2,434,117 - -0.6
2,434,117 - +0.0
2,434,117 - +0.0
2,434,128 + +0.7
2,434,129 - -0.6
2,434,180 + +0.2
2,434,180 + -0.7
2,434,180 + -0.4
2,434,181 - +0.2
2,434,181 - +0.0
2,434,181 - +0.9
2,434,181 - +0.1
2,434,181 - +1.1
2,434,181 - -0.1
2,434,181 - -0.4
2,434,181 - -0.9
2,434,181 - +0.7
2,434,181 - +0.6
2,434,181 - -1.1
2,434,181 - +1.2
2,434,181 - +0.4
2,434,181 - -2.3
2,434,343 + -0.5
2,434,343 + +1.0
2,434,344 - -1.1
2,434,357 + +0.3
2,434,357 + +0.6
2,434,357 + -0.1
2,434,357 + +0.1
2,434,357 + -1.9
2,434,357 + +0.7
2,434,358 - +2.2
2,434,358 - +0.1
2,434,369 + -0.1
2,434,369 + -0.1
2,434,369 + -0.9
2,434,370 - -1.2
2,434,370 - -0.3
2,434,370 - +0.3
2,434,480 + AO356_10685 0.12 +0.0
2,434,480 + AO356_10685 0.12 +1.3
2,434,480 + AO356_10685 0.12 +0.0
2,434,480 + AO356_10685 0.12 +0.7
2,434,480 + AO356_10685 0.12 -0.4
2,434,480 + AO356_10685 0.12 -1.4
2,434,481 - AO356_10685 0.12 -1.0
2,434,481 - AO356_10685 0.12 -1.1
2,434,481 - AO356_10685 0.12 +1.6
2,434,481 - AO356_10685 0.12 +0.4
2,434,481 - AO356_10685 0.12 +0.3
2,434,513 + AO356_10685 0.15 -1.2
2,434,513 + AO356_10685 0.15 -0.2
2,434,517 - AO356_10685 0.16 +0.1
2,434,552 + AO356_10685 0.19 -0.4
2,434,552 + AO356_10685 0.19 -1.0
2,434,553 - AO356_10685 0.19 +0.1
2,434,553 - AO356_10685 0.19 -0.1
2,434,553 - AO356_10685 0.19 -0.7
2,434,553 - AO356_10685 0.19 +0.1
2,434,553 - AO356_10685 0.19 -0.8
2,434,553 - AO356_10685 0.19 -0.6
2,434,553 - AO356_10685 0.19 +0.7
2,434,553 - AO356_10685 0.19 +0.1
2,434,567 + AO356_10685 0.21 +0.3
2,434,568 - AO356_10685 0.21 -0.7
2,434,568 - AO356_10685 0.21 -0.3
2,434,760 + AO356_10685 0.40 +0.2
2,434,760 + AO356_10685 0.40 -1.4
2,434,760 + AO356_10685 0.40 +0.4
2,434,760 + AO356_10685 0.40 -0.3
2,434,760 + AO356_10685 0.40 -0.1
2,434,761 - AO356_10685 0.40 +0.3
2,434,822 + AO356_10685 0.46 -1.4
2,434,822 + AO356_10685 0.46 -0.9
2,434,822 + AO356_10685 0.46 -0.7
2,434,823 - AO356_10685 0.46 +0.3
2,434,823 - AO356_10685 0.46 +0.2
2,434,823 - AO356_10685 0.46 +0.0
2,434,823 - AO356_10685 0.46 +0.1
2,434,823 - AO356_10685 0.46 -0.1
2,435,017 + AO356_10685 0.65 +0.7
2,435,017 + AO356_10685 0.65 -0.1
2,435,018 - AO356_10685 0.65 +0.7
2,435,018 - AO356_10685 0.65 +0.1
2,435,018 - AO356_10685 0.65 +0.1
2,435,018 - AO356_10685 0.65 -1.8
2,435,018 - AO356_10685 0.65 -1.6

Or see this region's nucleotide sequence