Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10585

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10580 and AO356_10585 are separated by 14 nucleotidesAO356_10585 and AO356_10590 are separated by 202 nucleotides AO356_10580: AO356_10580 - hypothetical protein, at 2,406,571 to 2,408,517 _10580 AO356_10585: AO356_10585 - hypothetical protein, at 2,408,532 to 2,409,224 _10585 AO356_10590: AO356_10590 - GntR family transcriptional regulator, at 2,409,427 to 2,410,119 _10590 Position (kb) 2408 2409 2410Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2407.569 kb on + strand, within AO356_10580at 2407.569 kb on + strand, within AO356_10580at 2407.808 kb on + strand, within AO356_10580at 2407.809 kb on - strand, within AO356_10580at 2407.982 kb on + strand, within AO356_10580at 2407.982 kb on + strand, within AO356_10580at 2407.982 kb on + strand, within AO356_10580at 2407.983 kb on - strand, within AO356_10580at 2407.983 kb on - strand, within AO356_10580at 2408.291 kb on + strand, within AO356_10580at 2408.291 kb on + strand, within AO356_10580at 2408.291 kb on + strand, within AO356_10580at 2408.291 kb on + strand, within AO356_10580at 2408.292 kb on - strand, within AO356_10580at 2408.292 kb on - strand, within AO356_10580at 2408.292 kb on - strand, within AO356_10580at 2408.295 kb on - strand, within AO356_10580at 2408.418 kb on - strandat 2408.418 kb on - strandat 2408.418 kb on - strandat 2408.418 kb on - strandat 2408.418 kb on - strandat 2408.418 kb on - strandat 2408.533 kb on + strandat 2408.533 kb on + strandat 2408.533 kb on + strandat 2408.533 kb on + strandat 2408.533 kb on + strandat 2408.534 kb on - strandat 2408.534 kb on - strandat 2408.537 kb on + strandat 2408.537 kb on + strandat 2408.538 kb on - strandat 2408.538 kb on - strandat 2408.538 kb on - strandat 2408.671 kb on + strand, within AO356_10585at 2408.671 kb on + strand, within AO356_10585at 2408.761 kb on + strand, within AO356_10585at 2408.761 kb on + strand, within AO356_10585at 2408.761 kb on + strand, within AO356_10585at 2408.762 kb on - strand, within AO356_10585at 2408.762 kb on - strand, within AO356_10585at 2408.764 kb on + strand, within AO356_10585at 2408.764 kb on + strand, within AO356_10585at 2408.764 kb on + strand, within AO356_10585at 2408.764 kb on + strand, within AO356_10585at 2408.764 kb on + strand, within AO356_10585at 2408.765 kb on - strand, within AO356_10585at 2408.765 kb on - strand, within AO356_10585at 2408.765 kb on - strand, within AO356_10585at 2408.765 kb on - strand, within AO356_10585at 2408.765 kb on - strand, within AO356_10585at 2408.809 kb on + strand, within AO356_10585at 2408.809 kb on + strand, within AO356_10585at 2408.809 kb on + strand, within AO356_10585at 2408.810 kb on - strand, within AO356_10585at 2408.810 kb on - strand, within AO356_10585at 2408.810 kb on - strand, within AO356_10585at 2408.810 kb on - strand, within AO356_10585at 2408.860 kb on + strand, within AO356_10585at 2408.860 kb on + strand, within AO356_10585at 2408.860 kb on + strand, within AO356_10585at 2408.860 kb on + strand, within AO356_10585at 2408.860 kb on + strand, within AO356_10585at 2408.861 kb on - strand, within AO356_10585at 2408.861 kb on - strand, within AO356_10585at 2408.861 kb on - strand, within AO356_10585at 2408.861 kb on - strand, within AO356_10585at 2408.861 kb on - strand, within AO356_10585at 2408.965 kb on + strand, within AO356_10585at 2408.966 kb on - strand, within AO356_10585at 2408.966 kb on - strand, within AO356_10585at 2409.091 kb on + strand, within AO356_10585at 2409.091 kb on + strand, within AO356_10585at 2409.091 kb on + strand, within AO356_10585at 2409.091 kb on + strand, within AO356_10585at 2409.091 kb on + strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.092 kb on - strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.093 kb on + strand, within AO356_10585at 2409.094 kb on - strand, within AO356_10585at 2409.094 kb on - strand, within AO356_10585at 2409.231 kb on + strandat 2409.231 kb on + strandat 2409.231 kb on + strandat 2409.232 kb on - strandat 2409.232 kb on - strandat 2409.232 kb on - strandat 2409.232 kb on - strandat 2409.232 kb on - strandat 2409.232 kb on - strandat 2409.284 kb on - strandat 2409.284 kb on - strandat 2409.321 kb on + strandat 2409.321 kb on + strandat 2409.328 kb on + strandat 2409.328 kb on + strandat 2409.329 kb on - strandat 2409.329 kb on - strandat 2409.329 kb on - strandat 2409.380 kb on - strandat 2409.403 kb on + strandat 2409.403 kb on + strandat 2409.406 kb on + strandat 2409.407 kb on - strandat 2409.407 kb on - strandat 2409.450 kb on + strandat 2409.451 kb on - strandat 2409.451 kb on - strandat 2409.457 kb on - strandat 2409.704 kb on + strand, within AO356_10590at 2409.704 kb on + strand, within AO356_10590at 2409.712 kb on + strand, within AO356_10590at 2409.712 kb on + strand, within AO356_10590at 2409.799 kb on + strand, within AO356_10590at 2409.799 kb on + strand, within AO356_10590at 2409.800 kb on - strand, within AO356_10590at 2409.800 kb on - strand, within AO356_10590at 2409.800 kb on - strand, within AO356_10590at 2409.800 kb on - strand, within AO356_10590at 2410.093 kb on + strandat 2410.156 kb on + strandat 2410.156 kb on + strandat 2410.156 kb on + strandat 2410.156 kb on + strandat 2410.157 kb on - strandat 2410.157 kb on - strandat 2410.160 kb on + strandat 2410.160 kb on + strandat 2410.161 kb on - strandat 2410.161 kb on - strandat 2410.161 kb on - strandat 2410.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,407,569 + AO356_10580 0.51 -0.8
2,407,569 + AO356_10580 0.51 +0.8
2,407,808 + AO356_10580 0.64 -0.1
2,407,809 - AO356_10580 0.64 +0.7
2,407,982 + AO356_10580 0.72 +0.0
2,407,982 + AO356_10580 0.72 +0.4
2,407,982 + AO356_10580 0.72 +1.3
2,407,983 - AO356_10580 0.73 +0.5
2,407,983 - AO356_10580 0.73 -0.6
2,408,291 + AO356_10580 0.88 -0.1
2,408,291 + AO356_10580 0.88 -0.6
2,408,291 + AO356_10580 0.88 +0.2
2,408,291 + AO356_10580 0.88 +0.2
2,408,292 - AO356_10580 0.88 +0.6
2,408,292 - AO356_10580 0.88 +1.0
2,408,292 - AO356_10580 0.88 +0.4
2,408,295 - AO356_10580 0.89 +0.9
2,408,418 - +0.9
2,408,418 - -0.4
2,408,418 - +0.6
2,408,418 - -0.2
2,408,418 - +0.3
2,408,418 - +0.9
2,408,533 + +1.8
2,408,533 + -0.3
2,408,533 + +0.8
2,408,533 + +1.6
2,408,533 + +0.5
2,408,534 - +0.4
2,408,534 - +0.7
2,408,537 + +0.2
2,408,537 + -0.2
2,408,538 - +0.5
2,408,538 - +0.3
2,408,538 - +1.2
2,408,671 + AO356_10585 0.20 -0.1
2,408,671 + AO356_10585 0.20 -1.4
2,408,761 + AO356_10585 0.33 -0.9
2,408,761 + AO356_10585 0.33 -0.2
2,408,761 + AO356_10585 0.33 -0.3
2,408,762 - AO356_10585 0.33 -2.5
2,408,762 - AO356_10585 0.33 -2.7
2,408,764 + AO356_10585 0.33 -1.4
2,408,764 + AO356_10585 0.33 -1.6
2,408,764 + AO356_10585 0.33 -1.8
2,408,764 + AO356_10585 0.33 +0.0
2,408,764 + AO356_10585 0.33 -0.5
2,408,765 - AO356_10585 0.34 -2.0
2,408,765 - AO356_10585 0.34 -0.9
2,408,765 - AO356_10585 0.34 -1.7
2,408,765 - AO356_10585 0.34 -0.3
2,408,765 - AO356_10585 0.34 -0.6
2,408,809 + AO356_10585 0.40 -0.7
2,408,809 + AO356_10585 0.40 +0.6
2,408,809 + AO356_10585 0.40 +0.9
2,408,810 - AO356_10585 0.40 -1.2
2,408,810 - AO356_10585 0.40 -1.2
2,408,810 - AO356_10585 0.40 -1.1
2,408,810 - AO356_10585 0.40 -0.7
2,408,860 + AO356_10585 0.47 -0.2
2,408,860 + AO356_10585 0.47 -0.7
2,408,860 + AO356_10585 0.47 -0.3
2,408,860 + AO356_10585 0.47 +0.3
2,408,860 + AO356_10585 0.47 -1.9
2,408,861 - AO356_10585 0.47 -1.9
2,408,861 - AO356_10585 0.47 -1.2
2,408,861 - AO356_10585 0.47 +0.1
2,408,861 - AO356_10585 0.47 +0.8
2,408,861 - AO356_10585 0.47 -2.0
2,408,965 + AO356_10585 0.62 -0.4
2,408,966 - AO356_10585 0.63 -0.2
2,408,966 - AO356_10585 0.63 -0.9
2,409,091 + AO356_10585 0.81 -0.6
2,409,091 + AO356_10585 0.81 -0.3
2,409,091 + AO356_10585 0.81 -0.8
2,409,091 + AO356_10585 0.81 -0.4
2,409,091 + AO356_10585 0.81 -0.0
2,409,092 - AO356_10585 0.81 -1.3
2,409,092 - AO356_10585 0.81 -2.9
2,409,092 - AO356_10585 0.81 -1.6
2,409,092 - AO356_10585 0.81 -3.3
2,409,092 - AO356_10585 0.81 -1.0
2,409,092 - AO356_10585 0.81 -0.6
2,409,092 - AO356_10585 0.81 -0.9
2,409,093 + AO356_10585 0.81 -1.5
2,409,093 + AO356_10585 0.81 -1.1
2,409,093 + AO356_10585 0.81 -1.3
2,409,093 + AO356_10585 0.81 -2.5
2,409,093 + AO356_10585 0.81 +0.6
2,409,093 + AO356_10585 0.81 -1.3
2,409,094 - AO356_10585 0.81 +1.6
2,409,094 - AO356_10585 0.81 -0.9
2,409,231 + -1.7
2,409,231 + +0.6
2,409,231 + +0.7
2,409,232 - +0.1
2,409,232 - -0.7
2,409,232 - -1.9
2,409,232 - -0.8
2,409,232 - -0.2
2,409,232 - +0.0
2,409,284 - -2.6
2,409,284 - +0.7
2,409,321 + -0.6
2,409,321 + +0.4
2,409,328 + +1.1
2,409,328 + -0.1
2,409,329 - -0.6
2,409,329 - -0.6
2,409,329 - +0.0
2,409,380 - -0.5
2,409,403 + +0.2
2,409,403 + -2.4
2,409,406 + +0.9
2,409,407 - +0.5
2,409,407 - -0.9
2,409,450 + +0.4
2,409,451 - -0.8
2,409,451 - -0.6
2,409,457 - -0.5
2,409,704 + AO356_10590 0.40 +1.4
2,409,704 + AO356_10590 0.40 +0.3
2,409,712 + AO356_10590 0.41 -0.7
2,409,712 + AO356_10590 0.41 -0.7
2,409,799 + AO356_10590 0.54 +0.9
2,409,799 + AO356_10590 0.54 +1.1
2,409,800 - AO356_10590 0.54 +0.3
2,409,800 - AO356_10590 0.54 +0.5
2,409,800 - AO356_10590 0.54 -0.5
2,409,800 - AO356_10590 0.54 -0.6
2,410,093 + -0.7
2,410,156 + -0.8
2,410,156 + +0.7
2,410,156 + -1.7
2,410,156 + -1.0
2,410,157 - +0.3
2,410,157 - +0.4
2,410,160 + +0.5
2,410,160 + -1.3
2,410,161 - -0.4
2,410,161 - +1.3
2,410,161 - +0.5
2,410,161 - -0.5

Or see this region's nucleotide sequence