Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09320 and AO356_09325 overlap by 8 nucleotides AO356_09325 and AO356_09330 are separated by 2 nucleotides AO356_09330 and AO356_09335 are separated by 3 nucleotides AO356_09335 and AO356_09340 are separated by 4 nucleotides
AO356_09320: AO356_09320 - type II secretion system protein GspI, at 2,107,484 to 2,107,870
_09320
AO356_09325: AO356_09325 - type II secretion system protein GspH, at 2,107,863 to 2,108,330
_09325
AO356_09330: AO356_09330 - type II secretion system protein GspG, at 2,108,333 to 2,108,791
_09330
AO356_09335: AO356_09335 - type II secretion system protein GspF, at 2,108,795 to 2,110,003
_09335
AO356_09340: AO356_09340 - type II secretion system protein GspE, at 2,110,008 to 2,111,471
_09340
Position (kb)
2108
2109
2110
2111 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2107.865 kb on - strand at 2108.011 kb on - strand, within AO356_09325 at 2108.140 kb on + strand, within AO356_09325 at 2108.140 kb on + strand, within AO356_09325 at 2108.140 kb on + strand, within AO356_09325 at 2108.141 kb on - strand, within AO356_09325 at 2108.141 kb on - strand, within AO356_09325 at 2108.141 kb on - strand, within AO356_09325 at 2108.403 kb on + strand, within AO356_09330 at 2108.403 kb on + strand, within AO356_09330 at 2108.403 kb on + strand, within AO356_09330 at 2108.448 kb on + strand, within AO356_09330 at 2108.448 kb on + strand, within AO356_09330 at 2108.449 kb on - strand, within AO356_09330 at 2108.449 kb on - strand, within AO356_09330 at 2108.493 kb on + strand, within AO356_09330 at 2108.493 kb on + strand, within AO356_09330 at 2108.494 kb on - strand, within AO356_09330 at 2108.703 kb on - strand, within AO356_09330 at 2108.743 kb on + strand, within AO356_09330 at 2109.023 kb on - strand, within AO356_09335 at 2109.069 kb on - strand, within AO356_09335 at 2109.441 kb on + strand, within AO356_09335 at 2109.441 kb on + strand, within AO356_09335 at 2109.441 kb on + strand, within AO356_09335 at 2109.442 kb on - strand, within AO356_09335 at 2109.514 kb on + strand, within AO356_09335 at 2109.546 kb on + strand, within AO356_09335 at 2109.546 kb on + strand, within AO356_09335 at 2109.547 kb on - strand, within AO356_09335 at 2109.547 kb on - strand, within AO356_09335 at 2109.547 kb on - strand, within AO356_09335 at 2110.186 kb on + strand, within AO356_09340 at 2110.186 kb on + strand, within AO356_09340 at 2110.186 kb on + strand, within AO356_09340 at 2110.186 kb on + strand, within AO356_09340 at 2110.186 kb on + strand, within AO356_09340 at 2110.186 kb on + strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.187 kb on - strand, within AO356_09340 at 2110.208 kb on - strand, within AO356_09340 at 2110.306 kb on + strand, within AO356_09340 at 2110.306 kb on + strand, within AO356_09340 at 2110.306 kb on + strand, within AO356_09340 at 2110.306 kb on + strand, within AO356_09340 at 2110.307 kb on - strand, within AO356_09340 at 2110.307 kb on - strand, within AO356_09340 at 2110.384 kb on + strand, within AO356_09340 at 2110.385 kb on - strand, within AO356_09340 at 2110.385 kb on - strand, within AO356_09340 at 2110.385 kb on - strand, within AO356_09340 at 2110.385 kb on - strand, within AO356_09340 at 2110.385 kb on - strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.694 kb on - strand, within AO356_09340
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 2,107,865 - +0.0 2,108,011 - AO356_09325 0.32 +0.1 2,108,140 + AO356_09325 0.59 -1.5 2,108,140 + AO356_09325 0.59 -0.2 2,108,140 + AO356_09325 0.59 +1.3 2,108,141 - AO356_09325 0.59 -0.7 2,108,141 - AO356_09325 0.59 +1.0 2,108,141 - AO356_09325 0.59 -0.7 2,108,403 + AO356_09330 0.15 -0.1 2,108,403 + AO356_09330 0.15 -1.4 2,108,403 + AO356_09330 0.15 +1.2 2,108,448 + AO356_09330 0.25 -0.5 2,108,448 + AO356_09330 0.25 -1.2 2,108,449 - AO356_09330 0.25 +0.1 2,108,449 - AO356_09330 0.25 -1.0 2,108,493 + AO356_09330 0.35 -0.6 2,108,493 + AO356_09330 0.35 -0.3 2,108,494 - AO356_09330 0.35 -0.7 2,108,703 - AO356_09330 0.81 +1.0 2,108,743 + AO356_09330 0.89 +0.3 2,109,023 - AO356_09335 0.19 -0.4 2,109,069 - AO356_09335 0.23 -0.7 2,109,441 + AO356_09335 0.53 +0.1 2,109,441 + AO356_09335 0.53 -0.1 2,109,441 + AO356_09335 0.53 -0.2 2,109,442 - AO356_09335 0.54 +0.1 2,109,514 + AO356_09335 0.59 -1.4 2,109,546 + AO356_09335 0.62 +1.0 2,109,546 + AO356_09335 0.62 -2.1 2,109,547 - AO356_09335 0.62 -0.5 2,109,547 - AO356_09335 0.62 -1.9 2,109,547 - AO356_09335 0.62 -0.5 2,110,186 + AO356_09340 0.12 -0.2 2,110,186 + AO356_09340 0.12 -0.1 2,110,186 + AO356_09340 0.12 +1.1 2,110,186 + AO356_09340 0.12 -0.0 2,110,186 + AO356_09340 0.12 -0.3 2,110,186 + AO356_09340 0.12 -0.3 2,110,187 - AO356_09340 0.12 +2.0 2,110,187 - AO356_09340 0.12 -0.1 2,110,187 - AO356_09340 0.12 +1.4 2,110,187 - AO356_09340 0.12 -0.6 2,110,187 - AO356_09340 0.12 -1.3 2,110,187 - AO356_09340 0.12 +0.8 2,110,187 - AO356_09340 0.12 -0.2 2,110,187 - AO356_09340 0.12 +0.6 2,110,187 - AO356_09340 0.12 +0.6 2,110,208 - AO356_09340 0.14 -0.1 2,110,306 + AO356_09340 0.20 +0.4 2,110,306 + AO356_09340 0.20 +0.1 2,110,306 + AO356_09340 0.20 -0.1 2,110,306 + AO356_09340 0.20 -0.4 2,110,307 - AO356_09340 0.20 +0.8 2,110,307 - AO356_09340 0.20 -0.7 2,110,384 + AO356_09340 0.26 +0.2 2,110,385 - AO356_09340 0.26 +1.5 2,110,385 - AO356_09340 0.26 -0.7 2,110,385 - AO356_09340 0.26 -0.6 2,110,385 - AO356_09340 0.26 +0.9 2,110,385 - AO356_09340 0.26 +0.2 2,110,627 + AO356_09340 0.42 -0.2 2,110,627 + AO356_09340 0.42 +0.2 2,110,627 + AO356_09340 0.42 -0.4 2,110,694 - AO356_09340 0.47 +0.3
Or see this region's nucleotide sequence