Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09335

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09320 and AO356_09325 overlap by 8 nucleotidesAO356_09325 and AO356_09330 are separated by 2 nucleotidesAO356_09330 and AO356_09335 are separated by 3 nucleotidesAO356_09335 and AO356_09340 are separated by 4 nucleotides AO356_09320: AO356_09320 - type II secretion system protein GspI, at 2,107,484 to 2,107,870 _09320 AO356_09325: AO356_09325 - type II secretion system protein GspH, at 2,107,863 to 2,108,330 _09325 AO356_09330: AO356_09330 - type II secretion system protein GspG, at 2,108,333 to 2,108,791 _09330 AO356_09335: AO356_09335 - type II secretion system protein GspF, at 2,108,795 to 2,110,003 _09335 AO356_09340: AO356_09340 - type II secretion system protein GspE, at 2,110,008 to 2,111,471 _09340 Position (kb) 2108 2109 2110 2111Strain fitness (log2 ratio) -2 -1 0 1 2at 2107.865 kb on - strandat 2108.011 kb on - strand, within AO356_09325at 2108.140 kb on + strand, within AO356_09325at 2108.140 kb on + strand, within AO356_09325at 2108.140 kb on + strand, within AO356_09325at 2108.141 kb on - strand, within AO356_09325at 2108.141 kb on - strand, within AO356_09325at 2108.141 kb on - strand, within AO356_09325at 2108.403 kb on + strand, within AO356_09330at 2108.403 kb on + strand, within AO356_09330at 2108.403 kb on + strand, within AO356_09330at 2108.448 kb on + strand, within AO356_09330at 2108.448 kb on + strand, within AO356_09330at 2108.449 kb on - strand, within AO356_09330at 2108.449 kb on - strand, within AO356_09330at 2108.493 kb on + strand, within AO356_09330at 2108.493 kb on + strand, within AO356_09330at 2108.494 kb on - strand, within AO356_09330at 2108.703 kb on - strand, within AO356_09330at 2108.743 kb on + strand, within AO356_09330at 2109.023 kb on - strand, within AO356_09335at 2109.069 kb on - strand, within AO356_09335at 2109.441 kb on + strand, within AO356_09335at 2109.441 kb on + strand, within AO356_09335at 2109.441 kb on + strand, within AO356_09335at 2109.442 kb on - strand, within AO356_09335at 2109.514 kb on + strand, within AO356_09335at 2109.546 kb on + strand, within AO356_09335at 2109.546 kb on + strand, within AO356_09335at 2109.547 kb on - strand, within AO356_09335at 2109.547 kb on - strand, within AO356_09335at 2109.547 kb on - strand, within AO356_09335at 2110.186 kb on + strand, within AO356_09340at 2110.186 kb on + strand, within AO356_09340at 2110.186 kb on + strand, within AO356_09340at 2110.186 kb on + strand, within AO356_09340at 2110.186 kb on + strand, within AO356_09340at 2110.186 kb on + strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.187 kb on - strand, within AO356_09340at 2110.208 kb on - strand, within AO356_09340at 2110.306 kb on + strand, within AO356_09340at 2110.306 kb on + strand, within AO356_09340at 2110.306 kb on + strand, within AO356_09340at 2110.306 kb on + strand, within AO356_09340at 2110.307 kb on - strand, within AO356_09340at 2110.307 kb on - strand, within AO356_09340at 2110.384 kb on + strand, within AO356_09340at 2110.385 kb on - strand, within AO356_09340at 2110.385 kb on - strand, within AO356_09340at 2110.385 kb on - strand, within AO356_09340at 2110.385 kb on - strand, within AO356_09340at 2110.385 kb on - strand, within AO356_09340at 2110.627 kb on + strand, within AO356_09340at 2110.627 kb on + strand, within AO356_09340at 2110.627 kb on + strand, within AO356_09340at 2110.694 kb on - strand, within AO356_09340

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,107,865 - +0.0
2,108,011 - AO356_09325 0.32 +0.1
2,108,140 + AO356_09325 0.59 -1.5
2,108,140 + AO356_09325 0.59 -0.2
2,108,140 + AO356_09325 0.59 +1.3
2,108,141 - AO356_09325 0.59 -0.7
2,108,141 - AO356_09325 0.59 +1.0
2,108,141 - AO356_09325 0.59 -0.7
2,108,403 + AO356_09330 0.15 -0.1
2,108,403 + AO356_09330 0.15 -1.4
2,108,403 + AO356_09330 0.15 +1.2
2,108,448 + AO356_09330 0.25 -0.5
2,108,448 + AO356_09330 0.25 -1.2
2,108,449 - AO356_09330 0.25 +0.1
2,108,449 - AO356_09330 0.25 -1.0
2,108,493 + AO356_09330 0.35 -0.6
2,108,493 + AO356_09330 0.35 -0.3
2,108,494 - AO356_09330 0.35 -0.7
2,108,703 - AO356_09330 0.81 +1.0
2,108,743 + AO356_09330 0.89 +0.3
2,109,023 - AO356_09335 0.19 -0.4
2,109,069 - AO356_09335 0.23 -0.7
2,109,441 + AO356_09335 0.53 +0.1
2,109,441 + AO356_09335 0.53 -0.1
2,109,441 + AO356_09335 0.53 -0.2
2,109,442 - AO356_09335 0.54 +0.1
2,109,514 + AO356_09335 0.59 -1.4
2,109,546 + AO356_09335 0.62 +1.0
2,109,546 + AO356_09335 0.62 -2.1
2,109,547 - AO356_09335 0.62 -0.5
2,109,547 - AO356_09335 0.62 -1.9
2,109,547 - AO356_09335 0.62 -0.5
2,110,186 + AO356_09340 0.12 -0.2
2,110,186 + AO356_09340 0.12 -0.1
2,110,186 + AO356_09340 0.12 +1.1
2,110,186 + AO356_09340 0.12 -0.0
2,110,186 + AO356_09340 0.12 -0.3
2,110,186 + AO356_09340 0.12 -0.3
2,110,187 - AO356_09340 0.12 +2.0
2,110,187 - AO356_09340 0.12 -0.1
2,110,187 - AO356_09340 0.12 +1.4
2,110,187 - AO356_09340 0.12 -0.6
2,110,187 - AO356_09340 0.12 -1.3
2,110,187 - AO356_09340 0.12 +0.8
2,110,187 - AO356_09340 0.12 -0.2
2,110,187 - AO356_09340 0.12 +0.6
2,110,187 - AO356_09340 0.12 +0.6
2,110,208 - AO356_09340 0.14 -0.1
2,110,306 + AO356_09340 0.20 +0.4
2,110,306 + AO356_09340 0.20 +0.1
2,110,306 + AO356_09340 0.20 -0.1
2,110,306 + AO356_09340 0.20 -0.4
2,110,307 - AO356_09340 0.20 +0.8
2,110,307 - AO356_09340 0.20 -0.7
2,110,384 + AO356_09340 0.26 +0.2
2,110,385 - AO356_09340 0.26 +1.5
2,110,385 - AO356_09340 0.26 -0.7
2,110,385 - AO356_09340 0.26 -0.6
2,110,385 - AO356_09340 0.26 +0.9
2,110,385 - AO356_09340 0.26 +0.2
2,110,627 + AO356_09340 0.42 -0.2
2,110,627 + AO356_09340 0.42 +0.2
2,110,627 + AO356_09340 0.42 -0.4
2,110,694 - AO356_09340 0.47 +0.3

Or see this region's nucleotide sequence