Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08855

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08850 and AO356_08855 are separated by 99 nucleotidesAO356_08855 and AO356_08860 overlap by 8 nucleotides AO356_08850: AO356_08850 - heptose 1-phosphate adenyltransferase, at 1,995,015 to 1,996,436 _08850 AO356_08855: AO356_08855 - adenylylsulfate kinase, at 1,996,536 to 1,997,144 _08855 AO356_08860: AO356_08860 - sulfotransferase, at 1,997,137 to 1,997,841 _08860 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -2 -1 0 1at 1996.451 kb on - strandat 1996.476 kb on - strandat 1996.684 kb on + strand, within AO356_08855at 1996.684 kb on + strand, within AO356_08855at 1996.727 kb on + strand, within AO356_08855at 1996.727 kb on + strand, within AO356_08855at 1996.727 kb on + strand, within AO356_08855at 1996.727 kb on + strand, within AO356_08855at 1996.727 kb on + strand, within AO356_08855at 1996.728 kb on - strand, within AO356_08855at 1996.728 kb on - strand, within AO356_08855at 1996.728 kb on - strand, within AO356_08855at 1996.728 kb on - strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.735 kb on + strand, within AO356_08855at 1996.736 kb on - strand, within AO356_08855at 1996.871 kb on + strand, within AO356_08855at 1996.872 kb on - strand, within AO356_08855at 1996.872 kb on - strand, within AO356_08855at 1997.095 kb on + strandat 1997.096 kb on - strandat 1997.096 kb on - strandat 1997.096 kb on - strandat 1997.096 kb on - strandat 1997.124 kb on + strandat 1997.124 kb on + strandat 1997.124 kb on + strandat 1997.125 kb on - strandat 1997.125 kb on - strandat 1997.125 kb on - strandat 1997.145 kb on - strandat 1997.159 kb on + strandat 1997.160 kb on - strandat 1997.160 kb on - strandat 1997.160 kb on - strandat 1997.171 kb on + strandat 1997.171 kb on + strandat 1997.172 kb on - strandat 1997.172 kb on - strandat 1997.172 kb on - strandat 1997.244 kb on + strand, within AO356_08860at 1997.245 kb on - strand, within AO356_08860at 1997.245 kb on - strand, within AO356_08860at 1997.245 kb on - strand, within AO356_08860at 1997.300 kb on + strand, within AO356_08860at 1997.316 kb on - strand, within AO356_08860at 1997.316 kb on - strand, within AO356_08860at 1997.325 kb on - strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.499 kb on + strand, within AO356_08860at 1997.500 kb on - strand, within AO356_08860at 1997.500 kb on - strand, within AO356_08860at 1997.500 kb on - strand, within AO356_08860at 1997.519 kb on + strand, within AO356_08860at 1997.519 kb on + strand, within AO356_08860at 1997.519 kb on + strand, within AO356_08860at 1997.520 kb on - strand, within AO356_08860at 1997.520 kb on - strand, within AO356_08860at 1997.520 kb on - strand, within AO356_08860at 1997.528 kb on + strand, within AO356_08860at 1997.579 kb on + strand, within AO356_08860at 1997.579 kb on + strand, within AO356_08860at 1997.579 kb on + strand, within AO356_08860at 1997.579 kb on + strand, within AO356_08860at 1997.603 kb on + strand, within AO356_08860at 1997.609 kb on + strand, within AO356_08860at 1997.609 kb on + strand, within AO356_08860at 1997.609 kb on + strand, within AO356_08860at 1997.610 kb on - strand, within AO356_08860at 1997.610 kb on - strand, within AO356_08860at 1997.610 kb on - strand, within AO356_08860at 1997.610 kb on - strand, within AO356_08860at 1997.610 kb on - strand, within AO356_08860at 1997.634 kb on - strand, within AO356_08860at 1997.828 kb on + strandat 1997.829 kb on - strandat 1997.829 kb on - strandat 1997.916 kb on + strandat 1997.938 kb on + strandat 1997.939 kb on - strandat 1997.939 kb on - strandat 1997.939 kb on - strandat 1997.962 kb on - strandat 1998.023 kb on + strandat 1998.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,996,451 - -0.6
1,996,476 - +0.1
1,996,684 + AO356_08855 0.24 -0.3
1,996,684 + AO356_08855 0.24 -0.5
1,996,727 + AO356_08855 0.31 -2.1
1,996,727 + AO356_08855 0.31 +0.6
1,996,727 + AO356_08855 0.31 +0.4
1,996,727 + AO356_08855 0.31 -0.6
1,996,727 + AO356_08855 0.31 -0.3
1,996,728 - AO356_08855 0.32 +0.0
1,996,728 - AO356_08855 0.32 +0.5
1,996,728 - AO356_08855 0.32 -1.0
1,996,728 - AO356_08855 0.32 +0.3
1,996,735 + AO356_08855 0.33 +1.1
1,996,735 + AO356_08855 0.33 +0.5
1,996,735 + AO356_08855 0.33 -0.3
1,996,735 + AO356_08855 0.33 +0.4
1,996,735 + AO356_08855 0.33 -0.2
1,996,735 + AO356_08855 0.33 +1.4
1,996,735 + AO356_08855 0.33 -1.2
1,996,736 - AO356_08855 0.33 -1.0
1,996,871 + AO356_08855 0.55 -1.8
1,996,872 - AO356_08855 0.55 +0.8
1,996,872 - AO356_08855 0.55 -0.2
1,997,095 + -0.3
1,997,096 - +0.0
1,997,096 - -0.1
1,997,096 - +0.4
1,997,096 - +1.7
1,997,124 + -0.5
1,997,124 + -1.4
1,997,124 + +0.6
1,997,125 - +0.2
1,997,125 - +0.8
1,997,125 - -0.3
1,997,145 - -0.8
1,997,159 + -1.6
1,997,160 - +0.8
1,997,160 - -0.1
1,997,160 - -0.6
1,997,171 + +0.4
1,997,171 + -1.0
1,997,172 - +0.9
1,997,172 - +0.1
1,997,172 - -0.1
1,997,244 + AO356_08860 0.15 -0.2
1,997,245 - AO356_08860 0.15 -2.0
1,997,245 - AO356_08860 0.15 -0.8
1,997,245 - AO356_08860 0.15 +0.4
1,997,300 + AO356_08860 0.23 -0.4
1,997,316 - AO356_08860 0.25 +0.6
1,997,316 - AO356_08860 0.25 +0.3
1,997,325 - AO356_08860 0.27 +0.4
1,997,499 + AO356_08860 0.51 +0.3
1,997,499 + AO356_08860 0.51 -0.0
1,997,499 + AO356_08860 0.51 -0.7
1,997,499 + AO356_08860 0.51 +0.2
1,997,499 + AO356_08860 0.51 +0.5
1,997,499 + AO356_08860 0.51 +0.6
1,997,499 + AO356_08860 0.51 +0.4
1,997,500 - AO356_08860 0.51 +0.6
1,997,500 - AO356_08860 0.51 -0.5
1,997,500 - AO356_08860 0.51 +0.1
1,997,519 + AO356_08860 0.54 +0.3
1,997,519 + AO356_08860 0.54 +0.0
1,997,519 + AO356_08860 0.54 +0.9
1,997,520 - AO356_08860 0.54 -0.2
1,997,520 - AO356_08860 0.54 -0.0
1,997,520 - AO356_08860 0.54 -0.3
1,997,528 + AO356_08860 0.55 +1.1
1,997,579 + AO356_08860 0.63 +0.9
1,997,579 + AO356_08860 0.63 -0.6
1,997,579 + AO356_08860 0.63 -0.5
1,997,579 + AO356_08860 0.63 +0.1
1,997,603 + AO356_08860 0.66 -1.6
1,997,609 + AO356_08860 0.67 +0.8
1,997,609 + AO356_08860 0.67 +0.2
1,997,609 + AO356_08860 0.67 +0.3
1,997,610 - AO356_08860 0.67 +0.7
1,997,610 - AO356_08860 0.67 +0.1
1,997,610 - AO356_08860 0.67 -0.6
1,997,610 - AO356_08860 0.67 +0.8
1,997,610 - AO356_08860 0.67 +0.5
1,997,634 - AO356_08860 0.70 -0.2
1,997,828 + -0.6
1,997,829 - -0.2
1,997,829 - -0.2
1,997,916 + +0.6
1,997,938 + +0.6
1,997,939 - +0.4
1,997,939 - -1.4
1,997,939 - -0.3
1,997,962 - +1.1
1,998,023 + +0.1
1,998,023 + +0.6

Or see this region's nucleotide sequence