Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07610 and AO356_07615 are separated by 318 nucleotides AO356_07615 and AO356_07620 are separated by 22 nucleotides
AO356_07610: AO356_07610 - LysR family transcriptional regulator, at 1,684,926 to 1,685,843
_07610
AO356_07615: AO356_07615 - AraC family transcriptional regulator, at 1,686,162 to 1,687,100
_07615
AO356_07620: AO356_07620 - short-chain dehydrogenase, at 1,687,123 to 1,687,956
_07620
Position (kb)
1686
1687
1688 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1685.223 kb on + strand, within AO356_07610 at 1685.224 kb on - strand, within AO356_07610 at 1685.224 kb on - strand, within AO356_07610 at 1685.224 kb on - strand, within AO356_07610 at 1685.224 kb on - strand, within AO356_07610 at 1685.238 kb on + strand, within AO356_07610 at 1685.238 kb on + strand, within AO356_07610 at 1685.238 kb on + strand, within AO356_07610 at 1685.239 kb on - strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.502 kb on + strand, within AO356_07610 at 1685.503 kb on - strand, within AO356_07610 at 1685.503 kb on - strand, within AO356_07610 at 1685.503 kb on - strand, within AO356_07610 at 1685.503 kb on - strand, within AO356_07610 at 1685.503 kb on - strand, within AO356_07610 at 1685.589 kb on - strand, within AO356_07610 at 1685.789 kb on + strand at 1685.789 kb on + strand at 1685.789 kb on + strand at 1685.790 kb on - strand at 1685.877 kb on + strand at 1685.979 kb on - strand at 1686.073 kb on + strand at 1686.073 kb on + strand at 1686.073 kb on + strand at 1686.073 kb on + strand at 1686.077 kb on + strand at 1686.077 kb on + strand at 1686.077 kb on + strand at 1686.077 kb on + strand at 1686.078 kb on - strand at 1686.078 kb on - strand at 1686.122 kb on - strand at 1686.122 kb on - strand at 1686.132 kb on + strand at 1686.163 kb on + strand at 1686.163 kb on + strand at 1686.164 kb on - strand at 1686.178 kb on + strand at 1686.178 kb on + strand at 1686.179 kb on - strand at 1686.211 kb on + strand at 1686.211 kb on + strand at 1686.211 kb on + strand at 1686.211 kb on + strand at 1686.211 kb on + strand at 1686.212 kb on - strand at 1686.212 kb on - strand at 1686.212 kb on - strand at 1686.212 kb on - strand at 1686.212 kb on - strand at 1686.212 kb on - strand at 1686.299 kb on - strand, within AO356_07615 at 1686.335 kb on + strand, within AO356_07615 at 1686.335 kb on + strand, within AO356_07615 at 1686.336 kb on - strand, within AO356_07615 at 1686.336 kb on - strand, within AO356_07615 at 1686.336 kb on - strand, within AO356_07615 at 1686.385 kb on + strand, within AO356_07615 at 1686.385 kb on + strand, within AO356_07615 at 1686.385 kb on + strand, within AO356_07615 at 1686.385 kb on + strand, within AO356_07615 at 1686.386 kb on - strand, within AO356_07615 at 1686.595 kb on + strand, within AO356_07615 at 1686.598 kb on + strand, within AO356_07615 at 1686.598 kb on + strand, within AO356_07615 at 1686.598 kb on + strand, within AO356_07615 at 1686.598 kb on + strand, within AO356_07615 at 1686.599 kb on - strand, within AO356_07615 at 1686.599 kb on - strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.709 kb on + strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.710 kb on - strand, within AO356_07615 at 1686.799 kb on + strand, within AO356_07615 at 1686.800 kb on - strand, within AO356_07615 at 1686.800 kb on - strand, within AO356_07615 at 1686.874 kb on + strand, within AO356_07615 at 1686.874 kb on + strand, within AO356_07615 at 1686.874 kb on + strand, within AO356_07615 at 1686.874 kb on + strand, within AO356_07615 at 1686.874 kb on + strand, within AO356_07615 at 1686.875 kb on - strand, within AO356_07615 at 1686.875 kb on - strand, within AO356_07615 at 1686.889 kb on + strand, within AO356_07615 at 1686.890 kb on - strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.895 kb on + strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.896 kb on - strand, within AO356_07615 at 1686.958 kb on + strand, within AO356_07615 at 1686.958 kb on + strand, within AO356_07615 at 1686.958 kb on + strand, within AO356_07615 at 1686.959 kb on - strand, within AO356_07615 at 1686.959 kb on - strand, within AO356_07615 at 1686.959 kb on - strand, within AO356_07615 at 1686.959 kb on - strand, within AO356_07615 at 1686.959 kb on - strand, within AO356_07615 at 1687.030 kb on + strand at 1687.030 kb on + strand at 1687.030 kb on + strand at 1687.031 kb on - strand at 1687.031 kb on - strand at 1687.031 kb on - strand at 1687.352 kb on + strand, within AO356_07620 at 1687.353 kb on - strand, within AO356_07620 at 1687.479 kb on + strand, within AO356_07620 at 1687.479 kb on + strand, within AO356_07620 at 1687.479 kb on + strand, within AO356_07620 at 1687.480 kb on - strand, within AO356_07620 at 1687.480 kb on - strand, within AO356_07620 at 1687.508 kb on + strand, within AO356_07620 at 1687.509 kb on - strand, within AO356_07620 at 1687.509 kb on - strand, within AO356_07620 at 1687.714 kb on + strand, within AO356_07620 at 1687.714 kb on + strand, within AO356_07620 at 1687.715 kb on - strand, within AO356_07620 at 1687.936 kb on + strand at 1687.936 kb on + strand at 1687.937 kb on - strand at 1687.970 kb on + strand at 1687.970 kb on + strand at 1687.970 kb on + strand at 1687.971 kb on - strand at 1688.015 kb on + strand at 1688.015 kb on + strand at 1688.015 kb on + strand at 1688.042 kb on + strand at 1688.042 kb on + strand at 1688.043 kb on - strand at 1688.043 kb on - strand at 1688.043 kb on - strand at 1688.043 kb on - strand at 1688.048 kb on + strand at 1688.060 kb on + strand at 1688.060 kb on + strand at 1688.060 kb on + strand at 1688.061 kb on - strand at 1688.061 kb on - strand at 1688.061 kb on - strand at 1688.062 kb on + strand at 1688.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 1,685,223 + AO356_07610 0.32 -0.9 1,685,224 - AO356_07610 0.32 -0.3 1,685,224 - AO356_07610 0.32 +1.0 1,685,224 - AO356_07610 0.32 +2.1 1,685,224 - AO356_07610 0.32 -0.8 1,685,238 + AO356_07610 0.34 +0.2 1,685,238 + AO356_07610 0.34 -0.9 1,685,238 + AO356_07610 0.34 +0.2 1,685,239 - AO356_07610 0.34 +0.5 1,685,502 + AO356_07610 0.63 -0.5 1,685,502 + AO356_07610 0.63 -0.2 1,685,502 + AO356_07610 0.63 -1.0 1,685,502 + AO356_07610 0.63 -0.8 1,685,502 + AO356_07610 0.63 +0.1 1,685,502 + AO356_07610 0.63 +0.6 1,685,502 + AO356_07610 0.63 -0.6 1,685,502 + AO356_07610 0.63 +0.4 1,685,503 - AO356_07610 0.63 -0.3 1,685,503 - AO356_07610 0.63 -0.5 1,685,503 - AO356_07610 0.63 +1.0 1,685,503 - AO356_07610 0.63 -0.1 1,685,503 - AO356_07610 0.63 -0.3 1,685,589 - AO356_07610 0.72 +0.9 1,685,789 + +0.9 1,685,789 + +0.5 1,685,789 + +0.8 1,685,790 - +0.1 1,685,877 + -0.1 1,685,979 - +0.8 1,686,073 + +2.1 1,686,073 + +0.2 1,686,073 + +0.1 1,686,073 + -0.7 1,686,077 + -0.1 1,686,077 + +1.0 1,686,077 + -0.3 1,686,077 + -0.5 1,686,078 - +0.2 1,686,078 - -0.1 1,686,122 - -0.5 1,686,122 - -1.9 1,686,132 + +0.0 1,686,163 + +0.1 1,686,163 + +0.2 1,686,164 - -0.5 1,686,178 + +0.6 1,686,178 + -0.7 1,686,179 - -0.5 1,686,211 + +0.1 1,686,211 + -1.4 1,686,211 + +0.1 1,686,211 + -1.5 1,686,211 + +0.9 1,686,212 - -0.2 1,686,212 - -0.7 1,686,212 - -0.9 1,686,212 - +0.4 1,686,212 - +0.1 1,686,212 - -0.7 1,686,299 - AO356_07615 0.15 -0.8 1,686,335 + AO356_07615 0.18 -0.7 1,686,335 + AO356_07615 0.18 +0.7 1,686,336 - AO356_07615 0.19 -0.2 1,686,336 - AO356_07615 0.19 +0.0 1,686,336 - AO356_07615 0.19 -0.9 1,686,385 + AO356_07615 0.24 -0.7 1,686,385 + AO356_07615 0.24 +0.1 1,686,385 + AO356_07615 0.24 -0.2 1,686,385 + AO356_07615 0.24 -1.0 1,686,386 - AO356_07615 0.24 +0.0 1,686,595 + AO356_07615 0.46 +0.2 1,686,598 + AO356_07615 0.46 -0.4 1,686,598 + AO356_07615 0.46 +0.0 1,686,598 + AO356_07615 0.46 +0.1 1,686,598 + AO356_07615 0.46 +0.1 1,686,599 - AO356_07615 0.47 +1.0 1,686,599 - AO356_07615 0.47 +0.2 1,686,709 + AO356_07615 0.58 +0.3 1,686,709 + AO356_07615 0.58 +1.5 1,686,709 + AO356_07615 0.58 -0.7 1,686,709 + AO356_07615 0.58 +1.2 1,686,709 + AO356_07615 0.58 -0.3 1,686,709 + AO356_07615 0.58 +0.2 1,686,709 + AO356_07615 0.58 +0.7 1,686,709 + AO356_07615 0.58 +0.6 1,686,710 - AO356_07615 0.58 +0.1 1,686,710 - AO356_07615 0.58 +0.5 1,686,710 - AO356_07615 0.58 +0.1 1,686,710 - AO356_07615 0.58 +0.7 1,686,710 - AO356_07615 0.58 +1.0 1,686,710 - AO356_07615 0.58 +1.0 1,686,710 - AO356_07615 0.58 -0.3 1,686,799 + AO356_07615 0.68 +0.7 1,686,800 - AO356_07615 0.68 -0.9 1,686,800 - AO356_07615 0.68 -0.4 1,686,874 + AO356_07615 0.76 +0.7 1,686,874 + AO356_07615 0.76 -1.1 1,686,874 + AO356_07615 0.76 +0.8 1,686,874 + AO356_07615 0.76 +0.7 1,686,874 + AO356_07615 0.76 +0.4 1,686,875 - AO356_07615 0.76 +0.4 1,686,875 - AO356_07615 0.76 +0.8 1,686,889 + AO356_07615 0.77 +0.0 1,686,890 - AO356_07615 0.78 -2.0 1,686,895 + AO356_07615 0.78 +0.0 1,686,895 + AO356_07615 0.78 +0.3 1,686,895 + AO356_07615 0.78 -1.7 1,686,895 + AO356_07615 0.78 -0.5 1,686,895 + AO356_07615 0.78 +0.3 1,686,895 + AO356_07615 0.78 +0.8 1,686,896 - AO356_07615 0.78 -0.3 1,686,896 - AO356_07615 0.78 +0.5 1,686,896 - AO356_07615 0.78 +1.3 1,686,896 - AO356_07615 0.78 -0.7 1,686,896 - AO356_07615 0.78 -0.4 1,686,896 - AO356_07615 0.78 -0.1 1,686,958 + AO356_07615 0.85 -0.1 1,686,958 + AO356_07615 0.85 -0.9 1,686,958 + AO356_07615 0.85 +0.5 1,686,959 - AO356_07615 0.85 -1.5 1,686,959 - AO356_07615 0.85 +0.4 1,686,959 - AO356_07615 0.85 +0.5 1,686,959 - AO356_07615 0.85 +0.5 1,686,959 - AO356_07615 0.85 +0.5 1,687,030 + -0.3 1,687,030 + -0.7 1,687,030 + +1.0 1,687,031 - -0.5 1,687,031 - +0.4 1,687,031 - -0.7 1,687,352 + AO356_07620 0.27 -0.4 1,687,353 - AO356_07620 0.28 -0.7 1,687,479 + AO356_07620 0.43 +0.1 1,687,479 + AO356_07620 0.43 -0.2 1,687,479 + AO356_07620 0.43 -0.3 1,687,480 - AO356_07620 0.43 +0.4 1,687,480 - AO356_07620 0.43 -1.5 1,687,508 + AO356_07620 0.46 +1.0 1,687,509 - AO356_07620 0.46 -0.3 1,687,509 - AO356_07620 0.46 -0.1 1,687,714 + AO356_07620 0.71 +0.5 1,687,714 + AO356_07620 0.71 +1.6 1,687,715 - AO356_07620 0.71 -1.4 1,687,936 + -0.6 1,687,936 + +0.2 1,687,937 - -0.1 1,687,970 + +0.2 1,687,970 + -1.1 1,687,970 + +2.9 1,687,971 - -0.8 1,688,015 + +0.5 1,688,015 + -0.6 1,688,015 + +0.1 1,688,042 + -0.5 1,688,042 + +0.3 1,688,043 - -0.3 1,688,043 - +0.5 1,688,043 - -0.6 1,688,043 - -0.1 1,688,048 + +0.1 1,688,060 + +0.8 1,688,060 + -0.0 1,688,060 + +0.7 1,688,061 - +0.0 1,688,061 - -0.1 1,688,061 - -0.5 1,688,062 + +0.7 1,688,063 - +0.1
Or see this region's nucleotide sequence