Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06660

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06655 and AO356_06660 are separated by 1 nucleotidesAO356_06660 and AO356_06665 are separated by 144 nucleotides AO356_06655: AO356_06655 - serine acetyltransferase, at 1,470,546 to 1,471,322 _06655 AO356_06660: AO356_06660 - RNA methyltransferase, at 1,471,324 to 1,472,094 _06660 AO356_06665: AO356_06665 - inositol monophosphatase, at 1,472,239 to 1,473,057 _06665 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 1470.625 kb on + strand, within AO356_06655at 1470.625 kb on + strand, within AO356_06655at 1470.625 kb on + strand, within AO356_06655at 1470.625 kb on + strand, within AO356_06655at 1470.625 kb on + strand, within AO356_06655at 1470.625 kb on + strand, within AO356_06655at 1470.626 kb on - strand, within AO356_06655at 1470.626 kb on - strand, within AO356_06655at 1470.626 kb on - strand, within AO356_06655at 1470.626 kb on - strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.629 kb on + strand, within AO356_06655at 1470.630 kb on - strand, within AO356_06655at 1470.630 kb on - strand, within AO356_06655at 1470.751 kb on + strand, within AO356_06655at 1470.751 kb on + strand, within AO356_06655at 1470.751 kb on + strand, within AO356_06655at 1470.751 kb on + strand, within AO356_06655at 1470.752 kb on - strand, within AO356_06655at 1471.326 kb on - strandat 1471.390 kb on + strandat 1471.391 kb on - strandat 1471.391 kb on - strandat 1471.391 kb on - strandat 1471.391 kb on - strandat 1471.391 kb on - strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.392 kb on + strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.393 kb on - strandat 1471.427 kb on + strand, within AO356_06660at 1471.428 kb on - strand, within AO356_06660at 1471.428 kb on - strand, within AO356_06660at 1471.428 kb on - strand, within AO356_06660at 1471.514 kb on + strand, within AO356_06660at 1471.514 kb on + strand, within AO356_06660at 1471.514 kb on + strand, within AO356_06660at 1471.514 kb on + strand, within AO356_06660at 1471.514 kb on + strand, within AO356_06660at 1471.515 kb on - strand, within AO356_06660at 1471.515 kb on - strand, within AO356_06660at 1471.515 kb on - strand, within AO356_06660at 1471.515 kb on - strand, within AO356_06660at 1471.515 kb on - strand, within AO356_06660at 1471.631 kb on + strand, within AO356_06660at 1471.631 kb on + strand, within AO356_06660at 1471.631 kb on + strand, within AO356_06660at 1471.631 kb on + strand, within AO356_06660at 1471.631 kb on + strand, within AO356_06660at 1471.632 kb on - strand, within AO356_06660at 1471.632 kb on - strand, within AO356_06660at 1471.692 kb on + strand, within AO356_06660at 1471.692 kb on + strand, within AO356_06660at 1471.839 kb on + strand, within AO356_06660at 1471.840 kb on - strand, within AO356_06660at 1471.861 kb on - strand, within AO356_06660at 1472.062 kb on - strandat 1472.144 kb on + strandat 1472.145 kb on - strandat 1472.155 kb on + strandat 1472.155 kb on + strandat 1472.156 kb on - strandat 1472.225 kb on + strandat 1473.068 kb on + strandat 1473.068 kb on + strandat 1473.069 kb on - strandat 1473.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,470,625 + AO356_06655 0.10 +2.5
1,470,625 + AO356_06655 0.10 +1.5
1,470,625 + AO356_06655 0.10 +1.2
1,470,625 + AO356_06655 0.10 +0.1
1,470,625 + AO356_06655 0.10 +2.4
1,470,625 + AO356_06655 0.10 +1.2
1,470,626 - AO356_06655 0.10 +3.0
1,470,626 - AO356_06655 0.10 +3.2
1,470,626 - AO356_06655 0.10 +2.9
1,470,626 - AO356_06655 0.10 +3.8
1,470,629 + AO356_06655 0.11 -0.7
1,470,629 + AO356_06655 0.11 -0.0
1,470,629 + AO356_06655 0.11 -1.4
1,470,629 + AO356_06655 0.11 -1.7
1,470,629 + AO356_06655 0.11 +1.6
1,470,629 + AO356_06655 0.11 +0.1
1,470,630 - AO356_06655 0.11 +1.6
1,470,630 - AO356_06655 0.11 +2.5
1,470,751 + AO356_06655 0.26 +6.4
1,470,751 + AO356_06655 0.26 +6.7
1,470,751 + AO356_06655 0.26 +6.8
1,470,751 + AO356_06655 0.26 +6.0
1,470,752 - AO356_06655 0.27 +7.8
1,471,326 - -1.4
1,471,390 + -1.4
1,471,391 - +4.0
1,471,391 - +2.8
1,471,391 - +3.2
1,471,391 - +3.3
1,471,391 - +3.0
1,471,392 + -2.0
1,471,392 + -0.7
1,471,392 + -1.4
1,471,392 + -2.4
1,471,392 + -1.6
1,471,392 + -2.0
1,471,392 + -3.1
1,471,392 + -1.6
1,471,392 + -2.1
1,471,392 + -1.1
1,471,393 - +4.1
1,471,393 - +5.4
1,471,393 - +5.6
1,471,393 - +3.7
1,471,393 - +3.4
1,471,393 - +3.5
1,471,393 - +4.4
1,471,393 - +6.4
1,471,393 - +2.4
1,471,393 - +3.5
1,471,393 - +6.1
1,471,393 - +5.3
1,471,427 + AO356_06660 0.13 -1.7
1,471,428 - AO356_06660 0.13 +5.2
1,471,428 - AO356_06660 0.13 +6.0
1,471,428 - AO356_06660 0.13 +6.0
1,471,514 + AO356_06660 0.25 -0.6
1,471,514 + AO356_06660 0.25 -2.0
1,471,514 + AO356_06660 0.25 -2.3
1,471,514 + AO356_06660 0.25 -2.5
1,471,514 + AO356_06660 0.25 -2.5
1,471,515 - AO356_06660 0.25 +4.3
1,471,515 - AO356_06660 0.25 +4.7
1,471,515 - AO356_06660 0.25 +3.3
1,471,515 - AO356_06660 0.25 +4.7
1,471,515 - AO356_06660 0.25 +4.2
1,471,631 + AO356_06660 0.40 -3.8
1,471,631 + AO356_06660 0.40 -1.4
1,471,631 + AO356_06660 0.40 -0.9
1,471,631 + AO356_06660 0.40 -2.4
1,471,631 + AO356_06660 0.40 -3.4
1,471,632 - AO356_06660 0.40 +3.9
1,471,632 - AO356_06660 0.40 +4.7
1,471,692 + AO356_06660 0.48 -2.8
1,471,692 + AO356_06660 0.48 -2.1
1,471,839 + AO356_06660 0.67 -2.0
1,471,840 - AO356_06660 0.67 +3.3
1,471,861 - AO356_06660 0.70 +2.3
1,472,062 - +3.0
1,472,144 + -2.4
1,472,145 - +2.1
1,472,155 + -1.1
1,472,155 + -2.1
1,472,156 - +1.8
1,472,225 + +0.4
1,473,068 + +0.5
1,473,068 + +0.3
1,473,069 - +1.5
1,473,069 - -0.1

Or see this region's nucleotide sequence