Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06435

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06430 and AO356_06435 are separated by 215 nucleotidesAO356_06435 and AO356_06440 are separated by 2 nucleotidesAO356_06440 and AO356_06445 are separated by 203 nucleotides AO356_06430: AO356_06430 - Lon protease, at 1,424,377 to 1,426,791 _06430 AO356_06435: AO356_06435 - peptidase inhibitor I42, at 1,427,007 to 1,427,399 _06435 AO356_06440: AO356_06440 - hypothetical protein, at 1,427,402 to 1,428,037 _06440 AO356_06445: AO356_06445 - tRNA (cmo5U34)-methyltransferase, at 1,428,241 to 1,428,984 _06445 Position (kb) 1427 1428Strain fitness (log2 ratio) -2 -1 0 1at 1426.405 kb on + strand, within AO356_06430at 1426.405 kb on + strand, within AO356_06430at 1426.405 kb on + strand, within AO356_06430at 1426.406 kb on - strand, within AO356_06430at 1426.406 kb on - strand, within AO356_06430at 1426.478 kb on + strand, within AO356_06430at 1426.479 kb on - strand, within AO356_06430at 1426.724 kb on - strandat 1426.799 kb on + strandat 1426.800 kb on - strandat 1426.802 kb on - strandat 1426.810 kb on + strandat 1426.954 kb on - strandat 1426.954 kb on - strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.006 kb on + strandat 1427.007 kb on - strandat 1427.206 kb on + strand, within AO356_06435at 1427.206 kb on + strand, within AO356_06435at 1427.206 kb on + strand, within AO356_06435at 1427.206 kb on + strand, within AO356_06435at 1427.206 kb on + strand, within AO356_06435at 1427.206 kb on + strand, within AO356_06435at 1427.207 kb on - strand, within AO356_06435at 1427.207 kb on - strand, within AO356_06435at 1427.233 kb on - strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.331 kb on + strand, within AO356_06435at 1427.332 kb on - strand, within AO356_06435at 1427.332 kb on - strand, within AO356_06435at 1427.332 kb on - strand, within AO356_06435at 1427.441 kb on + strandat 1427.441 kb on + strandat 1427.441 kb on + strandat 1427.441 kb on + strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.442 kb on - strandat 1427.447 kb on + strandat 1427.664 kb on - strand, within AO356_06440at 1427.664 kb on - strand, within AO356_06440at 1427.675 kb on + strand, within AO356_06440at 1427.676 kb on - strand, within AO356_06440at 1427.798 kb on + strand, within AO356_06440at 1427.798 kb on + strand, within AO356_06440at 1427.798 kb on + strand, within AO356_06440at 1427.799 kb on - strand, within AO356_06440at 1427.799 kb on - strand, within AO356_06440at 1427.963 kb on + strand, within AO356_06440at 1427.963 kb on + strand, within AO356_06440at 1427.963 kb on + strand, within AO356_06440at 1427.981 kb on + strandat 1427.981 kb on + strandat 1427.981 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.004 kb on + strandat 1428.005 kb on - strandat 1428.005 kb on - strandat 1428.005 kb on - strandat 1428.005 kb on - strandat 1428.035 kb on + strandat 1428.035 kb on + strandat 1428.035 kb on + strandat 1428.035 kb on + strandat 1428.036 kb on - strandat 1428.049 kb on + strandat 1428.049 kb on + strandat 1428.050 kb on - strandat 1428.053 kb on - strandat 1428.053 kb on - strandat 1428.129 kb on + strandat 1428.129 kb on + strandat 1428.130 kb on - strandat 1428.130 kb on - strandat 1428.131 kb on + strandat 1428.131 kb on + strandat 1428.131 kb on + strandat 1428.199 kb on + strandat 1428.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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1,426,405 + AO356_06430 0.84 -0.4
1,426,405 + AO356_06430 0.84 -0.4
1,426,405 + AO356_06430 0.84 +1.0
1,426,406 - AO356_06430 0.84 -0.1
1,426,406 - AO356_06430 0.84 -1.4
1,426,478 + AO356_06430 0.87 -1.3
1,426,479 - AO356_06430 0.87 -1.8
1,426,724 - -0.3
1,426,799 + +0.5
1,426,800 - +0.2
1,426,802 - +0.8
1,426,810 + -0.0
1,426,954 - +1.0
1,426,954 - -0.2
1,427,006 + -0.2
1,427,006 + +0.0
1,427,006 + -0.6
1,427,006 + +0.0
1,427,006 + +0.4
1,427,006 + +0.4
1,427,006 + -0.0
1,427,006 + -0.0
1,427,006 + +0.5
1,427,006 + +0.5
1,427,007 - -0.7
1,427,206 + AO356_06435 0.51 -1.1
1,427,206 + AO356_06435 0.51 -0.0
1,427,206 + AO356_06435 0.51 +0.3
1,427,206 + AO356_06435 0.51 +0.4
1,427,206 + AO356_06435 0.51 +0.9
1,427,206 + AO356_06435 0.51 +0.4
1,427,207 - AO356_06435 0.51 -0.4
1,427,207 - AO356_06435 0.51 +0.0
1,427,233 - AO356_06435 0.58 -0.8
1,427,331 + AO356_06435 0.82 -0.0
1,427,331 + AO356_06435 0.82 -0.7
1,427,331 + AO356_06435 0.82 +0.5
1,427,331 + AO356_06435 0.82 +0.5
1,427,331 + AO356_06435 0.82 -0.4
1,427,331 + AO356_06435 0.82 +0.8
1,427,332 - AO356_06435 0.83 +0.2
1,427,332 - AO356_06435 0.83 -0.2
1,427,332 - AO356_06435 0.83 +0.1
1,427,441 + +0.6
1,427,441 + -0.0
1,427,441 + -0.4
1,427,441 + +0.1
1,427,442 - +0.4
1,427,442 - +0.3
1,427,442 - +1.2
1,427,442 - +0.7
1,427,442 - +1.7
1,427,442 - +0.4
1,427,442 - +0.6
1,427,447 + +0.2
1,427,664 - AO356_06440 0.41 +0.1
1,427,664 - AO356_06440 0.41 -0.5
1,427,675 + AO356_06440 0.43 +0.5
1,427,676 - AO356_06440 0.43 +0.0
1,427,798 + AO356_06440 0.62 -0.4
1,427,798 + AO356_06440 0.62 -0.1
1,427,798 + AO356_06440 0.62 +0.2
1,427,799 - AO356_06440 0.62 -0.9
1,427,799 - AO356_06440 0.62 -1.1
1,427,963 + AO356_06440 0.88 -0.7
1,427,963 + AO356_06440 0.88 -0.3
1,427,963 + AO356_06440 0.88 -0.3
1,427,981 + +1.1
1,427,981 + -0.2
1,427,981 + +0.8
1,428,004 + +1.0
1,428,004 + -0.3
1,428,004 + -0.6
1,428,004 + +0.7
1,428,004 + -0.7
1,428,004 + +1.2
1,428,004 + -1.0
1,428,005 - -0.0
1,428,005 - +1.0
1,428,005 - -0.6
1,428,005 - +1.5
1,428,035 + -0.5
1,428,035 + +0.3
1,428,035 + -0.1
1,428,035 + -0.5
1,428,036 - -1.9
1,428,049 + -0.6
1,428,049 + +0.4
1,428,050 - -0.9
1,428,053 - -1.5
1,428,053 - +0.2
1,428,129 + -0.2
1,428,129 + +0.9
1,428,130 - +0.4
1,428,130 - -1.0
1,428,131 + +0.9
1,428,131 + -0.0
1,428,131 + -0.4
1,428,199 + -0.8
1,428,263 + +1.6

Or see this region's nucleotide sequence