Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02785

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02780 and AO356_02785 are separated by 10 nucleotidesAO356_02785 and AO356_02790 are separated by 216 nucleotides AO356_02780: AO356_02780 - nitrate reductase, at 611,647 to 614,364 _02780 AO356_02785: AO356_02785 - uroporphyrin-III methyltransferase, at 614,375 to 615,130 _02785 AO356_02790: AO356_02790 - porin, at 615,347 to 616,381 _02790 Position (kb) 614 615 616Strain fitness (log2 ratio) -2 -1 0 1at 613.979 kb on - strand, within AO356_02780at 614.265 kb on + strandat 614.265 kb on + strandat 614.266 kb on - strandat 614.356 kb on - strandat 614.375 kb on - strandat 614.375 kb on - strandat 614.424 kb on + strandat 614.424 kb on + strandat 614.424 kb on + strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.821 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.874 kb on - strand, within AO356_02785at 614.874 kb on - strand, within AO356_02785at 615.196 kb on + strandat 615.197 kb on - strandat 615.316 kb on + strandat 615.345 kb on - strandat 615.348 kb on + strandat 615.349 kb on - strandat 615.349 kb on - strandat 615.353 kb on - strandat 615.992 kb on - strand, within AO356_02790

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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613,979 - AO356_02780 0.86 -0.6
614,265 + -1.3
614,265 + +0.4
614,266 - -1.0
614,356 - -0.7
614,375 - -0.3
614,375 - +0.1
614,424 + +0.3
614,424 + +0.1
614,424 + +0.8
614,425 - +0.3
614,425 - -0.2
614,425 - +0.4
614,425 - -1.0
614,821 + AO356_02785 0.59 -1.3
614,873 + AO356_02785 0.66 -0.3
614,873 + AO356_02785 0.66 -0.7
614,873 + AO356_02785 0.66 -0.9
614,873 + AO356_02785 0.66 -0.9
614,874 - AO356_02785 0.66 -1.0
614,874 - AO356_02785 0.66 -2.6
615,196 + -0.9
615,197 - -1.0
615,316 + -0.5
615,345 - -1.5
615,348 + -1.3
615,349 - -1.9
615,349 - +0.8
615,353 - -0.3
615,992 - AO356_02790 0.62 -1.9

Or see this region's nucleotide sequence