Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02770

Experiment: Cobalt chloride 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02765 and AO356_02770 are separated by 427 nucleotidesAO356_02770 and AO356_02775 overlap by 4 nucleotidesAO356_02775 and AO356_02780 overlap by 1 nucleotides AO356_02765: AO356_02765 - protein kinase, at 606,782 to 608,452 _02765 AO356_02770: AO356_02770 - nitrite reductase, at 608,880 to 611,333 _02770 AO356_02775: AO356_02775 - nitrite reductase, at 611,330 to 611,647 _02775 AO356_02780: AO356_02780 - nitrate reductase, at 611,647 to 614,364 _02780 Position (kb) 608 609 610 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 607.917 kb on - strand, within AO356_02765at 607.917 kb on - strand, within AO356_02765at 607.917 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 607.995 kb on - strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.048 kb on + strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.049 kb on - strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.102 kb on + strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.103 kb on - strand, within AO356_02765at 608.123 kb on + strand, within AO356_02765at 608.124 kb on - strand, within AO356_02765at 608.343 kb on + strandat 608.343 kb on + strandat 608.447 kb on - strandat 608.558 kb on + strandat 608.558 kb on + strandat 608.559 kb on - strandat 608.559 kb on - strandat 608.615 kb on + strandat 608.615 kb on + strandat 608.616 kb on - strandat 608.616 kb on - strandat 608.656 kb on + strandat 608.657 kb on - strandat 608.657 kb on - strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.710 kb on + strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.711 kb on - strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.714 kb on + strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.715 kb on - strandat 608.784 kb on + strandat 608.818 kb on + strandat 608.967 kb on + strandat 608.967 kb on + strandat 608.968 kb on - strandat 609.006 kb on + strandat 609.006 kb on + strandat 609.006 kb on + strandat 609.007 kb on - strandat 609.007 kb on - strandat 609.007 kb on - strandat 609.243 kb on - strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.702 kb on + strand, within AO356_02770at 609.703 kb on - strand, within AO356_02770at 609.703 kb on - strand, within AO356_02770at 609.703 kb on - strand, within AO356_02770at 609.742 kb on - strand, within AO356_02770at 609.816 kb on + strand, within AO356_02770at 609.816 kb on + strand, within AO356_02770at 609.816 kb on + strand, within AO356_02770at 609.816 kb on + strand, within AO356_02770at 609.817 kb on - strand, within AO356_02770at 609.817 kb on - strand, within AO356_02770at 609.817 kb on - strand, within AO356_02770at 609.817 kb on - strand, within AO356_02770at 609.987 kb on + strand, within AO356_02770at 609.988 kb on - strand, within AO356_02770at 610.015 kb on - strand, within AO356_02770at 610.428 kb on + strand, within AO356_02770at 610.429 kb on - strand, within AO356_02770at 610.429 kb on - strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.482 kb on + strand, within AO356_02770at 610.483 kb on - strand, within AO356_02770at 610.485 kb on + strand, within AO356_02770at 610.486 kb on - strand, within AO356_02770at 610.581 kb on + strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.582 kb on - strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.697 kb on + strand, within AO356_02770at 610.698 kb on - strand, within AO356_02770at 610.773 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.118 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.368 kb on + strand, within AO356_02775at 611.680 kb on + strandat 611.681 kb on - strandat 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.993 kb on - strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.166 kb on - strand, within AO356_02780

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
remove
607,917 - AO356_02765 0.68 +0.2
607,917 - AO356_02765 0.68 -0.4
607,917 - AO356_02765 0.68 +1.8
607,995 - AO356_02765 0.73 +1.0
607,995 - AO356_02765 0.73 +2.1
607,995 - AO356_02765 0.73 +0.3
608,048 + AO356_02765 0.76 +0.8
608,048 + AO356_02765 0.76 -2.0
608,048 + AO356_02765 0.76 -0.3
608,049 - AO356_02765 0.76 +0.2
608,049 - AO356_02765 0.76 -0.4
608,049 - AO356_02765 0.76 +0.3
608,049 - AO356_02765 0.76 +0.2
608,049 - AO356_02765 0.76 -0.6
608,102 + AO356_02765 0.79 +1.8
608,102 + AO356_02765 0.79 -0.4
608,102 + AO356_02765 0.79 +0.9
608,102 + AO356_02765 0.79 +1.3
608,103 - AO356_02765 0.79 +0.8
608,103 - AO356_02765 0.79 -0.0
608,103 - AO356_02765 0.79 +0.8
608,123 + AO356_02765 0.80 -0.1
608,124 - AO356_02765 0.80 -1.2
608,343 + -0.2
608,343 + +0.1
608,447 - +0.7
608,558 + +0.1
608,558 + -0.7
608,559 - +0.2
608,559 - -0.4
608,615 + +0.3
608,615 + +0.4
608,616 - +0.1
608,616 - +1.0
608,656 + +0.6
608,657 - -0.9
608,657 - -0.7
608,710 + +0.2
608,710 + -0.2
608,710 + -0.5
608,710 + -0.7
608,710 + +1.6
608,711 - -0.4
608,711 - -0.5
608,711 - -0.3
608,711 - +0.7
608,714 + +0.8
608,714 + -0.7
608,714 + -0.3
608,714 + -2.1
608,715 - +0.9
608,715 - -0.3
608,715 - -0.8
608,715 - -0.4
608,784 + -2.4
608,818 + +0.5
608,967 + +0.6
608,967 + -0.8
608,968 - -0.9
609,006 + +1.1
609,006 + +0.4
609,006 + -1.3
609,007 - +0.1
609,007 - +1.1
609,007 - -0.9
609,243 - AO356_02770 0.15 +0.1
609,702 + AO356_02770 0.33 -0.7
609,702 + AO356_02770 0.33 -0.4
609,702 + AO356_02770 0.33 -0.8
609,702 + AO356_02770 0.33 +1.1
609,702 + AO356_02770 0.33 +0.5
609,702 + AO356_02770 0.33 +0.2
609,703 - AO356_02770 0.34 +1.1
609,703 - AO356_02770 0.34 -0.7
609,703 - AO356_02770 0.34 +0.2
609,742 - AO356_02770 0.35 -0.2
609,816 + AO356_02770 0.38 -0.4
609,816 + AO356_02770 0.38 -0.3
609,816 + AO356_02770 0.38 -1.8
609,816 + AO356_02770 0.38 +1.3
609,817 - AO356_02770 0.38 +1.8
609,817 - AO356_02770 0.38 -0.4
609,817 - AO356_02770 0.38 -0.5
609,817 - AO356_02770 0.38 +0.3
609,987 + AO356_02770 0.45 +0.3
609,988 - AO356_02770 0.45 +0.1
610,015 - AO356_02770 0.46 -0.7
610,428 + AO356_02770 0.63 -0.1
610,429 - AO356_02770 0.63 +0.5
610,429 - AO356_02770 0.63 -1.1
610,482 + AO356_02770 0.65 +0.3
610,482 + AO356_02770 0.65 +0.9
610,482 + AO356_02770 0.65 +0.8
610,483 - AO356_02770 0.65 -2.8
610,485 + AO356_02770 0.65 +0.0
610,486 - AO356_02770 0.65 +0.7
610,581 + AO356_02770 0.69 +0.2
610,582 - AO356_02770 0.69 +0.8
610,582 - AO356_02770 0.69 +0.1
610,582 - AO356_02770 0.69 +0.5
610,582 - AO356_02770 0.69 +0.3
610,659 + AO356_02770 0.72 -0.6
610,659 + AO356_02770 0.72 -0.9
610,659 + AO356_02770 0.72 -2.0
610,659 + AO356_02770 0.72 -0.3
610,660 - AO356_02770 0.73 -1.7
610,660 - AO356_02770 0.73 -0.7
610,660 - AO356_02770 0.73 +0.6
610,666 + AO356_02770 0.73 -1.6
610,666 + AO356_02770 0.73 +0.1
610,667 - AO356_02770 0.73 -0.3
610,667 - AO356_02770 0.73 -0.2
610,697 + AO356_02770 0.74 -0.3
610,698 - AO356_02770 0.74 -0.8
610,773 + AO356_02770 0.77 -0.6
610,995 + AO356_02770 0.86 +0.9
610,995 + AO356_02770 0.86 +0.2
610,995 + AO356_02770 0.86 +1.1
610,995 + AO356_02770 0.86 +0.0
610,995 + AO356_02770 0.86 -2.3
610,996 - AO356_02770 0.86 +1.1
610,996 - AO356_02770 0.86 +0.3
610,996 - AO356_02770 0.86 -0.5
610,996 - AO356_02770 0.86 +0.3
610,996 - AO356_02770 0.86 +0.6
611,076 + AO356_02770 0.89 -0.9
611,076 + AO356_02770 0.89 +0.3
611,076 + AO356_02770 0.89 +0.4
611,076 + AO356_02770 0.89 +1.6
611,076 + AO356_02770 0.89 -0.2
611,076 + AO356_02770 0.89 +0.5
611,076 + AO356_02770 0.89 +0.2
611,077 - AO356_02770 0.90 -0.0
611,077 - AO356_02770 0.90 -0.7
611,077 - AO356_02770 0.90 -0.3
611,077 - AO356_02770 0.90 -1.0
611,118 + +0.8
611,139 + +0.3
611,139 + +0.8
611,139 + -0.3
611,139 + +0.7
611,139 + -0.3
611,139 + -0.6
611,139 + +0.1
611,139 + -0.8
611,139 + +0.3
611,139 + -0.8
611,139 + +0.7
611,140 - -0.5
611,140 - +0.1
611,140 - -1.4
611,140 - -0.9
611,140 - -2.1
611,140 - +0.8
611,140 - +0.2
611,140 - -0.1
611,140 - -0.7
611,140 - +1.1
611,368 + AO356_02775 0.12 -0.9
611,680 + +0.4
611,681 - +0.4
611,959 + AO356_02780 0.11 +0.2
611,959 + AO356_02780 0.11 -0.6
611,959 + AO356_02780 0.11 +0.1
611,960 - AO356_02780 0.12 -1.0
611,960 - AO356_02780 0.12 -0.8
611,960 - AO356_02780 0.12 -1.1
611,975 + AO356_02780 0.12 +0.0
611,975 + AO356_02780 0.12 -0.6
611,989 + AO356_02780 0.13 +0.8
611,989 + AO356_02780 0.13 -1.2
611,989 + AO356_02780 0.13 -0.7
611,990 - AO356_02780 0.13 +0.1
611,990 - AO356_02780 0.13 -0.2
611,990 - AO356_02780 0.13 +1.3
611,990 - AO356_02780 0.13 +0.6
611,990 - AO356_02780 0.13 -0.3
611,992 + AO356_02780 0.13 +1.3
611,992 + AO356_02780 0.13 +0.3
611,992 + AO356_02780 0.13 -0.5
611,992 + AO356_02780 0.13 -0.7
611,993 - AO356_02780 0.13 -0.9
612,082 + AO356_02780 0.16 +0.6
612,082 + AO356_02780 0.16 -1.1
612,083 - AO356_02780 0.16 -0.4
612,083 - AO356_02780 0.16 +0.5
612,121 + AO356_02780 0.17 -0.4
612,121 + AO356_02780 0.17 +0.1
612,121 + AO356_02780 0.17 +0.2
612,121 + AO356_02780 0.17 -0.7
612,122 - AO356_02780 0.17 -1.8
612,122 - AO356_02780 0.17 -0.1
612,165 + AO356_02780 0.19 -1.1
612,165 + AO356_02780 0.19 -0.0
612,166 - AO356_02780 0.19 -0.4

Or see this region's nucleotide sequence