Experiment: Cobalt chloride 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02520 and AO356_02525 are separated by 338 nucleotides AO356_02525 and AO356_02530 are separated by 199 nucleotides AO356_02530 and AO356_02535 are separated by 572 nucleotides
AO356_02520: AO356_02520 - diguanylate cyclase, at 546,947 to 548,695
_02520
AO356_02525: AO356_02525 - Cro/Cl family transcriptional regulator, at 549,034 to 549,348
_02525
AO356_02530: AO356_02530 - hypothetical protein, at 549,548 to 550,054
_02530
AO356_02535: AO356_02535 - DNA polymerase III subunit gamma/tau, at 550,627 to 551,787
_02535
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.619 kb on + strand at 548.620 kb on - strand at 548.620 kb on - strand at 548.620 kb on - strand at 548.620 kb on - strand at 548.690 kb on - strand at 548.690 kb on - strand at 548.770 kb on + strand at 548.770 kb on + strand at 548.770 kb on + strand at 548.771 kb on - strand at 548.771 kb on - strand at 548.845 kb on + strand at 548.845 kb on + strand at 548.845 kb on + strand at 548.846 kb on - strand at 548.846 kb on - strand at 549.090 kb on + strand, within AO356_02525 at 549.091 kb on - strand, within AO356_02525 at 549.160 kb on + strand, within AO356_02525 at 549.160 kb on + strand, within AO356_02525 at 549.160 kb on + strand, within AO356_02525 at 549.161 kb on - strand, within AO356_02525 at 549.161 kb on - strand, within AO356_02525 at 549.262 kb on + strand, within AO356_02525 at 549.262 kb on + strand, within AO356_02525 at 549.263 kb on - strand, within AO356_02525 at 549.279 kb on - strand, within AO356_02525 at 549.279 kb on - strand, within AO356_02525 at 549.279 kb on - strand, within AO356_02525 at 549.438 kb on + strand at 549.438 kb on + strand at 549.439 kb on - strand at 549.439 kb on - strand at 549.439 kb on - strand at 549.439 kb on - strand at 549.475 kb on + strand at 549.553 kb on + strand at 549.606 kb on - strand, within AO356_02530 at 549.621 kb on + strand, within AO356_02530 at 549.621 kb on + strand, within AO356_02530 at 549.622 kb on - strand, within AO356_02530 at 549.622 kb on - strand, within AO356_02530 at 549.721 kb on + strand, within AO356_02530 at 549.722 kb on - strand, within AO356_02530 at 549.755 kb on + strand, within AO356_02530 at 549.756 kb on - strand, within AO356_02530 at 549.756 kb on - strand, within AO356_02530 at 549.758 kb on + strand, within AO356_02530 at 549.759 kb on - strand, within AO356_02530 at 549.759 kb on - strand, within AO356_02530 at 549.831 kb on - strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.833 kb on + strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.834 kb on - strand, within AO356_02530 at 549.920 kb on + strand, within AO356_02530 at 549.920 kb on + strand, within AO356_02530 at 549.920 kb on + strand, within AO356_02530 at 549.920 kb on + strand, within AO356_02530 at 549.921 kb on - strand, within AO356_02530 at 549.921 kb on - strand, within AO356_02530 at 549.921 kb on - strand, within AO356_02530 at 549.921 kb on - strand, within AO356_02530 at 549.921 kb on - strand, within AO356_02530 at 550.027 kb on + strand at 550.028 kb on - strand at 550.034 kb on + strand at 550.034 kb on + strand at 550.034 kb on + strand at 550.034 kb on + strand at 550.034 kb on + strand at 550.034 kb on + strand at 550.035 kb on - strand at 550.035 kb on - strand at 550.035 kb on - strand at 550.035 kb on - strand at 550.035 kb on - strand at 550.438 kb on + strand at 550.439 kb on - strand at 550.590 kb on + strand at 550.629 kb on - strand at 550.724 kb on + strand at 550.835 kb on + strand, within AO356_02535 at 550.835 kb on + strand, within AO356_02535 at 550.835 kb on + strand, within AO356_02535 at 550.835 kb on + strand, within AO356_02535 at 550.835 kb on + strand, within AO356_02535 at 550.836 kb on - strand, within AO356_02535 at 550.836 kb on - strand, within AO356_02535 at 550.836 kb on - strand, within AO356_02535 at 550.862 kb on + strand, within AO356_02535 at 550.862 kb on + strand, within AO356_02535 at 550.913 kb on - strand, within AO356_02535 at 550.935 kb on - strand, within AO356_02535 at 550.982 kb on + strand, within AO356_02535 at 551.031 kb on - strand, within AO356_02535
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM remove 548,619 + +1.2 548,620 - +2.3 548,620 - +2.3 548,620 - +1.7 548,620 - +1.0 548,690 - +2.4 548,690 - +2.3 548,770 + +2.1 548,770 + +1.1 548,770 + +1.2 548,771 - -1.0 548,771 - -0.7 548,845 + +1.4 548,845 + +1.3 548,845 + +1.8 548,846 - -1.2 548,846 - -0.9 549,090 + AO356_02525 0.18 -1.0 549,091 - AO356_02525 0.18 -3.7 549,160 + AO356_02525 0.40 +0.1 549,160 + AO356_02525 0.40 +0.1 549,160 + AO356_02525 0.40 +1.1 549,161 - AO356_02525 0.40 -1.2 549,161 - AO356_02525 0.40 -0.1 549,262 + AO356_02525 0.72 +0.1 549,262 + AO356_02525 0.72 -0.0 549,263 - AO356_02525 0.73 -1.1 549,279 - AO356_02525 0.78 -2.8 549,279 - AO356_02525 0.78 -1.0 549,279 - AO356_02525 0.78 -1.0 549,438 + -0.9 549,438 + +0.3 549,439 - -1.4 549,439 - -2.3 549,439 - -1.3 549,439 - -0.6 549,475 + -0.3 549,553 + -0.9 549,606 - AO356_02530 0.11 -2.2 549,621 + AO356_02530 0.14 +1.5 549,621 + AO356_02530 0.14 -0.8 549,622 - AO356_02530 0.15 -1.0 549,622 - AO356_02530 0.15 -1.2 549,721 + AO356_02530 0.34 -3.0 549,722 - AO356_02530 0.34 -0.5 549,755 + AO356_02530 0.41 -1.3 549,756 - AO356_02530 0.41 -1.5 549,756 - AO356_02530 0.41 -1.5 549,758 + AO356_02530 0.41 +0.7 549,759 - AO356_02530 0.42 -1.3 549,759 - AO356_02530 0.42 -1.5 549,831 - AO356_02530 0.56 -1.2 549,833 + AO356_02530 0.56 -1.5 549,833 + AO356_02530 0.56 -0.4 549,833 + AO356_02530 0.56 -1.2 549,833 + AO356_02530 0.56 -0.1 549,833 + AO356_02530 0.56 +1.5 549,833 + AO356_02530 0.56 -1.9 549,833 + AO356_02530 0.56 -2.0 549,834 - AO356_02530 0.56 -2.3 549,834 - AO356_02530 0.56 -1.0 549,834 - AO356_02530 0.56 -0.9 549,834 - AO356_02530 0.56 -2.4 549,834 - AO356_02530 0.56 -2.0 549,834 - AO356_02530 0.56 -0.5 549,834 - AO356_02530 0.56 -1.0 549,920 + AO356_02530 0.73 -0.5 549,920 + AO356_02530 0.73 -2.6 549,920 + AO356_02530 0.73 +0.7 549,920 + AO356_02530 0.73 +0.6 549,921 - AO356_02530 0.74 +0.3 549,921 - AO356_02530 0.74 -1.7 549,921 - AO356_02530 0.74 -2.8 549,921 - AO356_02530 0.74 +0.0 549,921 - AO356_02530 0.74 -2.1 550,027 + +0.1 550,028 - -1.4 550,034 + -2.0 550,034 + -2.0 550,034 + -0.9 550,034 + -1.2 550,034 + +0.3 550,034 + -1.9 550,035 - -0.3 550,035 - -0.6 550,035 - +0.6 550,035 - -1.0 550,035 - -1.2 550,438 + -0.1 550,439 - +0.2 550,590 + -0.2 550,629 - +0.6 550,724 + -1.2 550,835 + AO356_02535 0.18 +0.8 550,835 + AO356_02535 0.18 -0.8 550,835 + AO356_02535 0.18 -1.1 550,835 + AO356_02535 0.18 -2.0 550,835 + AO356_02535 0.18 -2.4 550,836 - AO356_02535 0.18 -0.3 550,836 - AO356_02535 0.18 -0.0 550,836 - AO356_02535 0.18 +0.8 550,862 + AO356_02535 0.20 +1.0 550,862 + AO356_02535 0.20 -0.5 550,913 - AO356_02535 0.25 -1.0 550,935 - AO356_02535 0.27 -0.5 550,982 + AO356_02535 0.31 -0.5 551,031 - AO356_02535 0.35 +0.8
Or see this region's nucleotide sequence