Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00380

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00375 and AO356_00380 are separated by 410 nucleotidesAO356_00380 and AO356_00385 are separated by 96 nucleotidesAO356_00385 and AO356_00390 are separated by 224 nucleotides AO356_00375: AO356_00375 - hypothetical protein, at 73,992 to 74,966 _00375 AO356_00380: AO356_00380 - alpha/beta hydrolase, at 75,377 to 76,246 _00380 AO356_00385: AO356_00385 - peptidylprolyl isomerase, at 76,343 to 76,624 _00385 AO356_00390: AO356_00390 - ABC transporter substrate-binding protein, at 76,849 to 78,717 _00390 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.398 kb on + strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.399 kb on - strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.487 kb on + strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.488 kb on - strand, within AO356_00375at 74.737 kb on + strand, within AO356_00375at 74.737 kb on + strand, within AO356_00375at 74.775 kb on - strand, within AO356_00375at 75.043 kb on + strandat 75.043 kb on + strandat 75.043 kb on + strandat 75.044 kb on - strandat 75.055 kb on + strandat 75.056 kb on - strandat 75.093 kb on - strandat 75.115 kb on - strandat 75.207 kb on + strandat 75.207 kb on + strandat 75.207 kb on + strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.208 kb on - strandat 75.219 kb on + strandat 75.219 kb on + strandat 75.220 kb on - strandat 75.220 kb on - strandat 75.231 kb on + strandat 75.243 kb on - strandat 75.302 kb on + strandat 75.902 kb on + strand, within AO356_00380at 75.902 kb on + strand, within AO356_00380at 75.902 kb on + strand, within AO356_00380at 75.903 kb on - strand, within AO356_00380at 75.966 kb on - strand, within AO356_00380at 75.968 kb on + strand, within AO356_00380at 75.969 kb on - strand, within AO356_00380at 76.205 kb on + strandat 76.206 kb on - strandat 76.206 kb on - strandat 76.206 kb on - strandat 76.317 kb on + strandat 76.318 kb on - strandat 76.556 kb on - strand, within AO356_00385at 76.676 kb on - strandat 76.809 kb on + strandat 76.838 kb on + strandat 76.946 kb on - strandat 76.946 kb on - strandat 77.071 kb on + strand, within AO356_00390at 77.071 kb on + strand, within AO356_00390at 77.072 kb on - strand, within AO356_00390at 77.116 kb on + strand, within AO356_00390at 77.116 kb on + strand, within AO356_00390at 77.152 kb on + strand, within AO356_00390at 77.152 kb on + strand, within AO356_00390at 77.152 kb on + strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.153 kb on - strand, within AO356_00390at 77.154 kb on + strand, within AO356_00390at 77.161 kb on + strand, within AO356_00390at 77.162 kb on - strand, within AO356_00390at 77.218 kb on + strand, within AO356_00390at 77.218 kb on + strand, within AO356_00390at 77.219 kb on - strand, within AO356_00390at 77.219 kb on - strand, within AO356_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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74,398 + AO356_00375 0.42 +0.5
74,398 + AO356_00375 0.42 +0.7
74,398 + AO356_00375 0.42 -1.2
74,398 + AO356_00375 0.42 +0.0
74,398 + AO356_00375 0.42 +0.0
74,398 + AO356_00375 0.42 -0.5
74,398 + AO356_00375 0.42 +0.2
74,398 + AO356_00375 0.42 +0.4
74,398 + AO356_00375 0.42 +0.5
74,399 - AO356_00375 0.42 +0.1
74,399 - AO356_00375 0.42 -1.3
74,399 - AO356_00375 0.42 -0.2
74,399 - AO356_00375 0.42 +0.2
74,399 - AO356_00375 0.42 -0.3
74,399 - AO356_00375 0.42 +0.0
74,399 - AO356_00375 0.42 +0.9
74,399 - AO356_00375 0.42 -0.6
74,399 - AO356_00375 0.42 +1.0
74,399 - AO356_00375 0.42 +1.0
74,399 - AO356_00375 0.42 -0.1
74,487 + AO356_00375 0.51 -3.3
74,487 + AO356_00375 0.51 +0.6
74,487 + AO356_00375 0.51 -0.8
74,487 + AO356_00375 0.51 +0.1
74,487 + AO356_00375 0.51 -0.5
74,488 - AO356_00375 0.51 -1.1
74,488 - AO356_00375 0.51 -0.2
74,488 - AO356_00375 0.51 +0.1
74,488 - AO356_00375 0.51 -0.4
74,488 - AO356_00375 0.51 +0.7
74,488 - AO356_00375 0.51 -0.8
74,488 - AO356_00375 0.51 -0.6
74,488 - AO356_00375 0.51 -0.3
74,488 - AO356_00375 0.51 -0.2
74,488 - AO356_00375 0.51 +0.3
74,737 + AO356_00375 0.76 +0.2
74,737 + AO356_00375 0.76 +0.8
74,775 - AO356_00375 0.80 +0.8
75,043 + +0.2
75,043 + +0.7
75,043 + +0.3
75,044 - +0.7
75,055 + +1.4
75,056 - +1.2
75,093 - +1.1
75,115 - -0.4
75,207 + -0.0
75,207 + -1.8
75,207 + -0.1
75,208 - -0.2
75,208 - +0.6
75,208 - -1.1
75,208 - -1.1
75,208 - +0.1
75,219 + -0.2
75,219 + -0.5
75,220 - +1.2
75,220 - -1.1
75,231 + -0.3
75,243 - -1.3
75,302 + -0.9
75,902 + AO356_00380 0.60 -1.6
75,902 + AO356_00380 0.60 -0.2
75,902 + AO356_00380 0.60 -0.3
75,903 - AO356_00380 0.60 -1.0
75,966 - AO356_00380 0.68 +0.1
75,968 + AO356_00380 0.68 -0.4
75,969 - AO356_00380 0.68 -1.6
76,205 + -0.5
76,206 - +0.3
76,206 - +0.4
76,206 - -1.6
76,317 + -0.1
76,318 - -1.1
76,556 - AO356_00385 0.76 -0.4
76,676 - +1.0
76,809 + -0.1
76,838 + +0.4
76,946 - +0.3
76,946 - +0.2
77,071 + AO356_00390 0.12 +0.3
77,071 + AO356_00390 0.12 +1.3
77,072 - AO356_00390 0.12 -0.9
77,116 + AO356_00390 0.14 +0.3
77,116 + AO356_00390 0.14 +1.2
77,152 + AO356_00390 0.16 +0.3
77,152 + AO356_00390 0.16 -0.1
77,152 + AO356_00390 0.16 +0.6
77,153 - AO356_00390 0.16 +1.1
77,153 - AO356_00390 0.16 +0.5
77,153 - AO356_00390 0.16 -1.6
77,153 - AO356_00390 0.16 -0.4
77,153 - AO356_00390 0.16 -0.6
77,153 - AO356_00390 0.16 -1.1
77,154 + AO356_00390 0.16 +0.2
77,161 + AO356_00390 0.17 -0.2
77,162 - AO356_00390 0.17 +0.4
77,218 + AO356_00390 0.20 -0.6
77,218 + AO356_00390 0.20 -0.2
77,219 - AO356_00390 0.20 +0.4
77,219 - AO356_00390 0.20 -0.1

Or see this region's nucleotide sequence