Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00270

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00265 and AO356_00270 are separated by 3 nucleotidesAO356_00270 and AO356_00275 are separated by 10 nucleotides AO356_00265: AO356_00265 - conjugal transfer protein, at 48,370 to 49,752 _00265 AO356_00270: AO356_00270 - hypothetical protein, at 49,756 to 50,064 _00270 AO356_00275: AO356_00275 - hypothetical protein, at 50,075 to 51,616 _00275 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 48.763 kb on + strand, within AO356_00265at 49.065 kb on + strand, within AO356_00265at 49.065 kb on + strand, within AO356_00265at 49.065 kb on + strand, within AO356_00265at 49.110 kb on + strand, within AO356_00265at 49.134 kb on + strand, within AO356_00265at 49.135 kb on - strand, within AO356_00265at 49.191 kb on - strand, within AO356_00265at 49.279 kb on + strand, within AO356_00265at 49.294 kb on - strand, within AO356_00265at 49.488 kb on - strand, within AO356_00265at 49.589 kb on + strand, within AO356_00265at 49.689 kb on + strandat 49.725 kb on + strandat 49.726 kb on - strandat 49.726 kb on - strandat 49.726 kb on - strandat 49.750 kb on + strandat 49.750 kb on + strandat 49.751 kb on - strandat 49.751 kb on - strandat 49.903 kb on - strand, within AO356_00270at 49.930 kb on + strand, within AO356_00270at 50.022 kb on - strand, within AO356_00270at 50.096 kb on + strandat 50.097 kb on - strandat 50.245 kb on + strand, within AO356_00275at 50.245 kb on + strand, within AO356_00275at 50.246 kb on - strand, within AO356_00275at 50.434 kb on + strand, within AO356_00275at 50.553 kb on + strand, within AO356_00275at 50.553 kb on + strand, within AO356_00275at 50.554 kb on - strand, within AO356_00275at 50.554 kb on - strand, within AO356_00275at 50.554 kb on - strand, within AO356_00275at 50.592 kb on + strand, within AO356_00275at 50.593 kb on - strand, within AO356_00275at 50.593 kb on - strand, within AO356_00275at 50.593 kb on - strand, within AO356_00275at 50.631 kb on - strand, within AO356_00275at 50.636 kb on + strand, within AO356_00275at 50.637 kb on - strand, within AO356_00275at 50.718 kb on - strand, within AO356_00275at 50.741 kb on + strand, within AO356_00275at 50.742 kb on - strand, within AO356_00275at 50.742 kb on - strand, within AO356_00275at 50.783 kb on + strand, within AO356_00275at 50.784 kb on - strand, within AO356_00275at 50.784 kb on - strand, within AO356_00275at 50.784 kb on - strand, within AO356_00275at 50.972 kb on - strand, within AO356_00275at 51.033 kb on - strand, within AO356_00275at 51.033 kb on - strand, within AO356_00275at 51.041 kb on + strand, within AO356_00275at 51.042 kb on - strand, within AO356_00275at 51.042 kb on - strand, within AO356_00275

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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48,763 + AO356_00265 0.28 +1.0
49,065 + AO356_00265 0.50 -0.2
49,065 + AO356_00265 0.50 +0.1
49,065 + AO356_00265 0.50 +1.0
49,110 + AO356_00265 0.54 +0.5
49,134 + AO356_00265 0.55 +1.0
49,135 - AO356_00265 0.55 -0.3
49,191 - AO356_00265 0.59 +1.0
49,279 + AO356_00265 0.66 +0.3
49,294 - AO356_00265 0.67 -0.1
49,488 - AO356_00265 0.81 -0.5
49,589 + AO356_00265 0.88 +0.3
49,689 + +0.5
49,725 + +0.6
49,726 - -0.9
49,726 - +1.0
49,726 - -0.7
49,750 + +1.2
49,750 + +0.8
49,751 - -0.2
49,751 - +0.5
49,903 - AO356_00270 0.48 -1.6
49,930 + AO356_00270 0.56 -0.6
50,022 - AO356_00270 0.86 -0.4
50,096 + -0.2
50,097 - +0.5
50,245 + AO356_00275 0.11 -1.1
50,245 + AO356_00275 0.11 +0.1
50,246 - AO356_00275 0.11 +0.3
50,434 + AO356_00275 0.23 +0.3
50,553 + AO356_00275 0.31 -0.9
50,553 + AO356_00275 0.31 +0.1
50,554 - AO356_00275 0.31 +0.4
50,554 - AO356_00275 0.31 +0.2
50,554 - AO356_00275 0.31 +0.4
50,592 + AO356_00275 0.34 +0.3
50,593 - AO356_00275 0.34 -0.6
50,593 - AO356_00275 0.34 +0.0
50,593 - AO356_00275 0.34 +1.0
50,631 - AO356_00275 0.36 +0.2
50,636 + AO356_00275 0.36 +1.0
50,637 - AO356_00275 0.36 -1.3
50,718 - AO356_00275 0.42 +1.3
50,741 + AO356_00275 0.43 -0.0
50,742 - AO356_00275 0.43 +0.3
50,742 - AO356_00275 0.43 -1.1
50,783 + AO356_00275 0.46 +0.4
50,784 - AO356_00275 0.46 +0.7
50,784 - AO356_00275 0.46 +1.7
50,784 - AO356_00275 0.46 -1.5
50,972 - AO356_00275 0.58 -1.2
51,033 - AO356_00275 0.62 -0.2
51,033 - AO356_00275 0.62 +0.8
51,041 + AO356_00275 0.63 +0.3
51,042 - AO356_00275 0.63 -0.4
51,042 - AO356_00275 0.63 +1.7

Or see this region's nucleotide sequence