Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04025 and SMc04026 are separated by 330 nucleotides SMc04026 and SMc04028 are separated by 100 nucleotides
SMc04025: SMc04025 - hypothetical protein, at 3,023,553 to 3,024,815
SMc04025
SMc04026: SMc04026 - glutamate synthase, at 3,025,146 to 3,026,603
SMc04026
SMc04028: SMc04028 - glutamate synthase, at 3,026,704 to 3,031,428
SMc04028
Position (kb)
3025
3026
3027 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3024.813 kb on + strand at 3024.813 kb on + strand at 3024.814 kb on - strand at 3024.814 kb on - strand at 3024.875 kb on + strand at 3024.875 kb on + strand at 3025.820 kb on - strand, within SMc04026 at 3025.820 kb on - strand, within SMc04026 at 3025.898 kb on - strand, within SMc04026 at 3026.048 kb on - strand, within SMc04026 at 3026.201 kb on + strand, within SMc04026 at 3026.202 kb on - strand, within SMc04026 at 3026.202 kb on - strand, within SMc04026 at 3026.203 kb on + strand, within SMc04026 at 3026.203 kb on + strand, within SMc04026 at 3026.204 kb on - strand, within SMc04026 at 3026.215 kb on + strand, within SMc04026 at 3026.216 kb on - strand, within SMc04026 at 3026.384 kb on - strand, within SMc04026 at 3026.446 kb on + strand, within SMc04026 at 3026.592 kb on - strand at 3026.606 kb on + strand at 3026.606 kb on + strand at 3026.607 kb on - strand at 3026.607 kb on - strand at 3026.607 kb on - strand at 3026.607 kb on - strand at 3026.607 kb on - strand at 3026.607 kb on - strand at 3026.760 kb on - strand at 3026.760 kb on - strand at 3026.841 kb on + strand at 3026.842 kb on - strand at 3026.843 kb on + strand at 3026.844 kb on - strand at 3026.844 kb on - strand at 3026.844 kb on - strand at 3026.844 kb on - strand at 3027.050 kb on + strand at 3027.051 kb on - strand at 3027.128 kb on + strand at 3027.129 kb on - strand at 3027.219 kb on - strand, within SMc04028 at 3027.219 kb on - strand, within SMc04028 at 3027.219 kb on - strand, within SMc04028 at 3027.252 kb on + strand, within SMc04028 at 3027.253 kb on - strand, within SMc04028 at 3027.344 kb on + strand, within SMc04028
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 3,024,813 + -0.2 3,024,813 + +0.7 3,024,814 - -0.1 3,024,814 - +0.6 3,024,875 + -0.7 3,024,875 + -0.4 3,025,820 - SMc04026 0.46 +0.3 3,025,820 - SMc04026 0.46 -0.8 3,025,898 - SMc04026 0.52 -0.9 3,026,048 - SMc04026 0.62 -2.0 3,026,201 + SMc04026 0.72 -1.8 3,026,202 - SMc04026 0.72 -1.0 3,026,202 - SMc04026 0.72 -2.1 3,026,203 + SMc04026 0.72 -1.4 3,026,203 + SMc04026 0.72 -0.8 3,026,204 - SMc04026 0.73 -1.0 3,026,215 + SMc04026 0.73 -1.4 3,026,216 - SMc04026 0.73 -1.6 3,026,384 - SMc04026 0.85 -1.0 3,026,446 + SMc04026 0.89 -0.8 3,026,592 - -2.6 3,026,606 + -1.2 3,026,606 + -0.4 3,026,607 - -1.5 3,026,607 - -0.9 3,026,607 - -1.2 3,026,607 - +1.3 3,026,607 - -0.5 3,026,607 - -0.0 3,026,760 - -0.9 3,026,760 - -0.2 3,026,841 + -0.1 3,026,842 - -0.1 3,026,843 + -2.7 3,026,844 - -0.5 3,026,844 - -0.8 3,026,844 - -0.8 3,026,844 - -1.4 3,027,050 + +1.2 3,027,051 - -0.0 3,027,128 + -3.0 3,027,129 - +0.7 3,027,219 - SMc04028 0.11 -1.1 3,027,219 - SMc04028 0.11 -0.8 3,027,219 - SMc04028 0.11 +0.4 3,027,252 + SMc04028 0.12 -2.2 3,027,253 - SMc04028 0.12 -2.5 3,027,344 + SMc04028 0.14 -1.1
Or see this region's nucleotide sequence