Strain Fitness in Sinorhizobium meliloti 1021 around SMc03925

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03924 and SMc03925 are separated by 4 nucleotidesSMc03925 and SMc03926 are separated by 229 nucleotides SMc03924: SMc03924 - glycogen synthase, at 3,071,302 to 3,072,744 SMc03924 SMc03925: SMc03925 - phosphoglucomutase, at 3,072,749 to 3,074,377 SMc03925 SMc03926: SMc03926 - glycosyl hydrolase, at 3,074,607 to 3,076,595 SMc03926 Position (kb) 3072 3073 3074 3075Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3071.882 kb on - strand, within SMc03924at 3071.882 kb on - strand, within SMc03924at 3071.953 kb on + strand, within SMc03924at 3071.953 kb on + strand, within SMc03924at 3071.954 kb on - strand, within SMc03924at 3071.954 kb on - strand, within SMc03924at 3071.954 kb on - strand, within SMc03924at 3072.098 kb on - strand, within SMc03924at 3072.345 kb on + strand, within SMc03924at 3072.454 kb on + strand, within SMc03924at 3072.455 kb on - strand, within SMc03924at 3072.593 kb on + strand, within SMc03924at 3072.625 kb on + strandat 3072.625 kb on + strandat 3072.718 kb on + strandat 3074.516 kb on - strandat 3074.516 kb on - strandat 3074.560 kb on - strandat 3074.667 kb on - strandat 3074.667 kb on - strandat 3074.791 kb on + strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.833 kb on - strand, within SMc03926at 3074.886 kb on + strand, within SMc03926at 3074.887 kb on - strand, within SMc03926at 3075.037 kb on - strand, within SMc03926at 3075.238 kb on - strand, within SMc03926at 3075.238 kb on - strand, within SMc03926

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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3,071,882 - SMc03924 0.40 +1.2
3,071,882 - SMc03924 0.40 -2.2
3,071,953 + SMc03924 0.45 +0.1
3,071,953 + SMc03924 0.45 -2.5
3,071,954 - SMc03924 0.45 -0.2
3,071,954 - SMc03924 0.45 +0.0
3,071,954 - SMc03924 0.45 -1.9
3,072,098 - SMc03924 0.55 -1.8
3,072,345 + SMc03924 0.72 -3.4
3,072,454 + SMc03924 0.80 -2.2
3,072,455 - SMc03924 0.80 -0.7
3,072,593 + SMc03924 0.89 -3.8
3,072,625 + -0.3
3,072,625 + -3.0
3,072,718 + -2.3
3,074,516 - +1.4
3,074,516 - +1.1
3,074,560 - +0.1
3,074,667 - -1.0
3,074,667 - -0.0
3,074,791 + -0.7
3,074,792 - -2.0
3,074,792 - +0.5
3,074,792 - -1.0
3,074,792 - -0.3
3,074,792 - -0.2
3,074,792 - -2.1
3,074,833 - SMc03926 0.11 +1.6
3,074,886 + SMc03926 0.14 +0.1
3,074,887 - SMc03926 0.14 -1.4
3,075,037 - SMc03926 0.22 +1.6
3,075,238 - SMc03926 0.32 +1.5
3,075,238 - SMc03926 0.32 -0.2

Or see this region's nucleotide sequence