Strain Fitness in Sinorhizobium meliloti 1021 around SMc03925
Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
3,071,882 | - | SMc03924 | 0.40 | +1.2 | |
3,071,882 | - | SMc03924 | 0.40 | -2.2 | |
3,071,953 | + | SMc03924 | 0.45 | +0.1 | |
3,071,953 | + | SMc03924 | 0.45 | -2.5 | |
3,071,954 | - | SMc03924 | 0.45 | -0.2 | |
3,071,954 | - | SMc03924 | 0.45 | +0.0 | |
3,071,954 | - | SMc03924 | 0.45 | -1.9 | |
3,072,098 | - | SMc03924 | 0.55 | -1.8 | |
3,072,345 | + | SMc03924 | 0.72 | -3.4 | |
3,072,454 | + | SMc03924 | 0.80 | -2.2 | |
3,072,455 | - | SMc03924 | 0.80 | -0.7 | |
3,072,593 | + | SMc03924 | 0.89 | -3.8 | |
3,072,625 | + | -0.3 | |||
3,072,625 | + | -3.0 | |||
3,072,718 | + | -2.3 | |||
3,074,516 | - | +1.4 | |||
3,074,516 | - | +1.1 | |||
3,074,560 | - | +0.1 | |||
3,074,667 | - | -1.0 | |||
3,074,667 | - | -0.0 | |||
3,074,791 | + | -0.7 | |||
3,074,792 | - | -2.0 | |||
3,074,792 | - | +0.5 | |||
3,074,792 | - | -1.0 | |||
3,074,792 | - | -0.3 | |||
3,074,792 | - | -0.2 | |||
3,074,792 | - | -2.1 | |||
3,074,833 | - | SMc03926 | 0.11 | +1.6 | |
3,074,886 | + | SMc03926 | 0.14 | +0.1 | |
3,074,887 | - | SMc03926 | 0.14 | -1.4 | |
3,075,037 | - | SMc03926 | 0.22 | +1.6 | |
3,075,238 | - | SMc03926 | 0.32 | +1.5 | |
3,075,238 | - | SMc03926 | 0.32 | -0.2 |
Or see this region's nucleotide sequence