Strain Fitness in Sinorhizobium meliloti 1021 around SMc03809

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03808 and SMc03809 are separated by 135 nucleotidesSMc03809 and SMc03810 are separated by 211 nucleotides SMc03808: SMc03808 - cell division transmembrane protein, at 3,473,291 to 3,475,936 SMc03808 SMc03809: SMc03809 - hypothetical protein, at 3,476,072 to 3,476,734 SMc03809 SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755 SMc03810 Position (kb) 3476 3477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.819 kb on + strandat 3475.899 kb on + strandat 3476.810 kb on - strandat 3476.959 kb on + strandat 3477.001 kb on + strandat 3477.365 kb on + strand, within SMc03810at 3477.366 kb on - strand, within SMc03810at 3477.518 kb on - strand, within SMc03810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
3,475,819 + +0.4
3,475,819 + +1.3
3,475,819 + +2.3
3,475,899 + +4.1
3,476,810 - -2.4
3,476,959 + -2.9
3,477,001 + -0.6
3,477,365 + SMc03810 0.52 -0.2
3,477,366 - SMc03810 0.52 +0.6
3,477,518 - SMc03810 0.71 -0.4

Or see this region's nucleotide sequence