Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03048 and SMc03049 are separated by 2 nucleotides SMc03049 and SMc03050 are separated by 37 nucleotides SMc03050 and SMc03051 overlap by 4 nucleotides SMc03051 and SMc03052 overlap by 10 nucleotides
SMc03048: SMc03048 - flagellar hook-associated protein FlgK, at 744,506 to 745,924
SMc03048
SMc03049: SMc03049 - flagellar hook-associated protein FlgL, at 745,927 to 746,964
SMc03049
SMc03050: SMc03050 - flagellar biosynthesis regulatory protein FlaF, at 747,002 to 747,349
SMc03050
SMc03051: SMc03051 - flagellar biosynthesis repressor FlbT, at 747,346 to 747,795
SMc03051
SMc03052: SMc03052 - flagellar basal body rod modification protein, at 747,786 to 748,202
SMc03052
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.107 kb on + strand, within SMc03048 at 745.123 kb on + strand, within SMc03048 at 745.154 kb on - strand, within SMc03048 at 745.163 kb on + strand, within SMc03048 at 745.164 kb on - strand, within SMc03048 at 745.164 kb on - strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.165 kb on + strand, within SMc03048 at 745.166 kb on - strand, within SMc03048 at 745.232 kb on + strand, within SMc03048 at 745.232 kb on + strand, within SMc03048 at 745.233 kb on - strand, within SMc03048 at 745.240 kb on + strand, within SMc03048 at 745.240 kb on + strand, within SMc03048 at 745.261 kb on - strand, within SMc03048 at 745.261 kb on - strand, within SMc03048 at 745.592 kb on + strand, within SMc03048 at 745.594 kb on + strand, within SMc03048 at 745.594 kb on + strand, within SMc03048 at 745.595 kb on - strand, within SMc03048 at 745.723 kb on - strand, within SMc03048 at 745.853 kb on + strand at 745.853 kb on + strand at 745.853 kb on + strand at 745.854 kb on - strand at 745.854 kb on - strand at 745.854 kb on - strand at 745.854 kb on - strand at 745.854 kb on - strand at 746.115 kb on + strand, within SMc03049 at 746.274 kb on - strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.374 kb on + strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.375 kb on - strand, within SMc03049 at 746.377 kb on - strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.419 kb on + strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.420 kb on - strand, within SMc03049 at 746.439 kb on + strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.440 kb on - strand, within SMc03049 at 746.490 kb on + strand, within SMc03049 at 746.692 kb on + strand, within SMc03049 at 746.693 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.734 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.797 kb on - strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.835 kb on + strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.836 kb on - strand, within SMc03049 at 746.839 kb on - strand, within SMc03049 at 746.863 kb on + strand at 746.864 kb on - strand at 746.914 kb on + strand at 746.914 kb on + strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.915 kb on - strand at 746.952 kb on - strand at 746.963 kb on - strand at 746.963 kb on - strand at 746.969 kb on + strand at 747.005 kb on + strand at 747.005 kb on + strand at 747.017 kb on + strand at 747.123 kb on - strand, within SMc03050 at 747.123 kb on - strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.149 kb on + strand, within SMc03050 at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.318 kb on + strand at 747.319 kb on - strand at 747.319 kb on - strand at 747.363 kb on + strand at 747.363 kb on + strand at 747.364 kb on - strand at 747.364 kb on - strand at 747.396 kb on - strand, within SMc03051 at 747.517 kb on + strand, within SMc03051 at 747.518 kb on - strand, within SMc03051 at 747.726 kb on - strand, within SMc03051 at 747.767 kb on + strand at 747.822 kb on + strand at 747.823 kb on - strand at 747.823 kb on - strand at 747.882 kb on + strand, within SMc03052 at 747.883 kb on - strand, within SMc03052
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 745,107 + SMc03048 0.42 +2.1 745,123 + SMc03048 0.43 +0.1 745,154 - SMc03048 0.46 -1.4 745,163 + SMc03048 0.46 -1.6 745,164 - SMc03048 0.46 +1.1 745,164 - SMc03048 0.46 -2.6 745,165 + SMc03048 0.46 -0.7 745,165 + SMc03048 0.46 -0.9 745,165 + SMc03048 0.46 +0.1 745,166 - SMc03048 0.47 -0.3 745,232 + SMc03048 0.51 -0.5 745,232 + SMc03048 0.51 -2.8 745,233 - SMc03048 0.51 +0.8 745,240 + SMc03048 0.52 -0.3 745,240 + SMc03048 0.52 -1.5 745,261 - SMc03048 0.53 -1.2 745,261 - SMc03048 0.53 -3.0 745,592 + SMc03048 0.77 +0.1 745,594 + SMc03048 0.77 -0.5 745,594 + SMc03048 0.77 -1.7 745,595 - SMc03048 0.77 -0.7 745,723 - SMc03048 0.86 +0.3 745,853 + -1.7 745,853 + +0.3 745,853 + -0.7 745,854 - -0.9 745,854 - +2.3 745,854 - -1.1 745,854 - -0.8 745,854 - -1.5 746,115 + SMc03049 0.18 -2.4 746,274 - SMc03049 0.33 -2.2 746,374 + SMc03049 0.43 -0.4 746,374 + SMc03049 0.43 -0.5 746,374 + SMc03049 0.43 -0.4 746,375 - SMc03049 0.43 -1.5 746,375 - SMc03049 0.43 -0.2 746,377 - SMc03049 0.43 +1.9 746,419 + SMc03049 0.47 +0.9 746,419 + SMc03049 0.47 -1.0 746,419 + SMc03049 0.47 -1.5 746,420 - SMc03049 0.47 -1.9 746,420 - SMc03049 0.47 -0.9 746,420 - SMc03049 0.47 -1.3 746,439 + SMc03049 0.49 +0.1 746,440 - SMc03049 0.49 -1.6 746,440 - SMc03049 0.49 -3.2 746,440 - SMc03049 0.49 +0.2 746,440 - SMc03049 0.49 +0.6 746,490 + SMc03049 0.54 -0.7 746,692 + SMc03049 0.74 -1.2 746,693 - SMc03049 0.74 -0.7 746,734 - SMc03049 0.78 -0.3 746,734 - SMc03049 0.78 -0.3 746,797 - SMc03049 0.84 +0.4 746,797 - SMc03049 0.84 -0.1 746,835 + SMc03049 0.87 -1.2 746,835 + SMc03049 0.87 -0.5 746,835 + SMc03049 0.87 -0.9 746,835 + SMc03049 0.87 +0.9 746,835 + SMc03049 0.87 -0.5 746,836 - SMc03049 0.88 +0.8 746,836 - SMc03049 0.88 -1.1 746,836 - SMc03049 0.88 -1.3 746,839 - SMc03049 0.88 -1.0 746,863 + -3.1 746,864 - -0.0 746,914 + -2.1 746,914 + -2.2 746,915 - -0.5 746,915 - -1.4 746,915 - -1.1 746,952 - -1.3 746,963 - -1.4 746,963 - -1.2 746,969 + -0.1 747,005 + -1.5 747,005 + -0.7 747,017 + -0.6 747,123 - SMc03050 0.35 +0.0 747,123 - SMc03050 0.35 +2.3 747,149 + SMc03050 0.42 +0.3 747,149 + SMc03050 0.42 -0.3 747,318 + -0.0 747,318 + -2.6 747,318 + -2.4 747,318 + -0.9 747,319 - -2.1 747,319 - -3.5 747,363 + -0.2 747,363 + -0.5 747,364 - +0.0 747,364 - -0.7 747,396 - SMc03051 0.11 -3.5 747,517 + SMc03051 0.38 -2.3 747,518 - SMc03051 0.38 -1.1 747,726 - SMc03051 0.84 +0.4 747,767 + +0.2 747,822 + -1.0 747,823 - -0.2 747,823 - +0.6 747,882 + SMc03052 0.23 +0.5 747,883 - SMc03052 0.23 -0.3
Or see this region's nucleotide sequence