Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03015 and SMc03016 are separated by 11 nucleotides SMc03016 and SMc03017 are separated by 8 nucleotides SMc03017 and SMc03018 overlap by 4 nucleotides
SMc03015: SMc03015 - transcriptional regulator, at 714,089 to 714,826
SMc03015
SMc03016: SMc03016 - transcriptional regulator, at 714,838 to 715,578
SMc03016
SMc03017: SMc03017 - hypothetical protein, at 715,587 to 716,033
SMc03017
SMc03018: SMc03018 - flagellar biosynthesis protein FlhB, at 716,030 to 717,112
SMc03018
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1
2 at 714.601 kb on + strand, within SMc03015 at 714.601 kb on + strand, within SMc03015 at 714.602 kb on - strand, within SMc03015 at 714.602 kb on - strand, within SMc03015 at 714.602 kb on - strand, within SMc03015 at 714.629 kb on - strand, within SMc03015 at 714.743 kb on + strand, within SMc03015 at 714.743 kb on + strand, within SMc03015 at 714.744 kb on - strand, within SMc03015 at 714.744 kb on - strand, within SMc03015 at 714.744 kb on - strand, within SMc03015 at 714.845 kb on - strand at 715.261 kb on + strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.283 kb on - strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.567 kb on + strand at 715.568 kb on - strand at 715.569 kb on + strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.659 kb on - strand, within SMc03017 at 715.722 kb on - strand, within SMc03017 at 715.817 kb on + strand, within SMc03017 at 715.818 kb on - strand at 715.819 kb on + strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.862 kb on - strand, within SMc03017 at 715.903 kb on + strand, within SMc03017 at 715.958 kb on - strand, within SMc03017 at 715.990 kb on - strand at 715.990 kb on - strand at 716.065 kb on - strand at 716.233 kb on + strand, within SMc03018 at 716.234 kb on - strand, within SMc03018 at 716.271 kb on + strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.282 kb on + strand, within SMc03018 at 716.290 kb on - strand, within SMc03018 at 716.457 kb on + strand, within SMc03018 at 716.458 kb on - strand, within SMc03018 at 716.604 kb on + strand, within SMc03018 at 716.649 kb on - strand, within SMc03018 at 716.694 kb on + strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.887 kb on + strand, within SMc03018
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 714,601 + SMc03015 0.69 +0.1 714,601 + SMc03015 0.69 +1.8 714,602 - SMc03015 0.70 +1.5 714,602 - SMc03015 0.70 +0.6 714,602 - SMc03015 0.70 -0.9 714,629 - SMc03015 0.73 +0.1 714,743 + SMc03015 0.89 -2.6 714,743 + SMc03015 0.89 +0.5 714,744 - SMc03015 0.89 +0.8 714,744 - SMc03015 0.89 +1.4 714,744 - SMc03015 0.89 +1.8 714,845 - +0.9 715,261 + SMc03016 0.57 +0.9 715,262 - SMc03016 0.57 +0.6 715,262 - SMc03016 0.57 +2.4 715,283 - SMc03016 0.60 +1.5 715,437 + SMc03016 0.81 +0.2 715,437 + SMc03016 0.81 +1.4 715,492 + SMc03016 0.88 +2.6 715,492 + SMc03016 0.88 +1.4 715,493 - SMc03016 0.88 +1.4 715,493 - SMc03016 0.88 +1.9 715,493 - SMc03016 0.88 -1.5 715,567 + +0.7 715,568 - +0.9 715,569 + +1.2 715,570 - +1.4 715,570 - +1.7 715,570 - +0.5 715,659 - SMc03017 0.16 +0.4 715,722 - SMc03017 0.30 +0.1 715,817 + SMc03017 0.51 -1.0 715,818 - -0.4 715,819 + SMc03017 0.52 -0.5 715,820 - SMc03017 0.52 +0.6 715,820 - SMc03017 0.52 +0.9 715,861 + SMc03017 0.61 +0.8 715,861 + SMc03017 0.61 -0.5 715,861 + SMc03017 0.61 -0.5 715,862 - SMc03017 0.62 +0.7 715,903 + SMc03017 0.71 -0.3 715,958 - SMc03017 0.83 -0.8 715,990 - -0.1 715,990 - +1.0 716,065 - +0.4 716,233 + SMc03018 0.19 -0.7 716,234 - SMc03018 0.19 -0.0 716,271 + SMc03018 0.22 +0.0 716,272 - SMc03018 0.22 +0.4 716,272 - SMc03018 0.22 -1.6 716,282 + SMc03018 0.23 -0.1 716,290 - SMc03018 0.24 +0.4 716,457 + SMc03018 0.39 +0.8 716,458 - SMc03018 0.40 -2.6 716,604 + SMc03018 0.53 +0.2 716,649 - SMc03018 0.57 -1.2 716,694 + SMc03018 0.61 -1.0 716,695 - SMc03018 0.61 -0.5 716,695 - SMc03018 0.61 +1.0 716,887 + SMc03018 0.79 +1.0
Or see this region's nucleotide sequence