Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03008 and SMc03009 overlap by 4 nucleotides SMc03009 and SMc03010 overlap by 4 nucleotides SMc03010 and SMc03011 overlap by 1 nucleotides SMc03011 and SMc03012 overlap by 4 nucleotides SMc03012 and SMc03013 are separated by 29 nucleotides
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
SMc03011: SMc03011 - chemotaxis regulator protein, at 709,182 to 709,571
SMc03011
SMc03012: SMc03012 - chemoreceptor glutamine deamidase CheD, at 709,568 to 710,119
SMc03012
SMc03013: SMc03013 - hypothetical protein, at 710,149 to 710,523
SMc03013
Position (kb) 708
709
710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.032 kb on - strand, within SMc03009 at 708.099 kb on - strand at 708.222 kb on + strand at 708.223 kb on - strand at 708.397 kb on - strand, within SMc03010 at 708.471 kb on + strand, within SMc03010 at 708.808 kb on + strand, within SMc03010 at 708.846 kb on + strand, within SMc03010 at 709.087 kb on + strand at 709.087 kb on + strand at 709.088 kb on - strand at 709.180 kb on + strand at 709.181 kb on - strand at 709.202 kb on - strand at 709.776 kb on - strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.025 kb on - strand, within SMc03012
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 707,161 + SMc03008 0.85 +1.0 707,185 + -2.2 707,336 + SMc03009 0.12 +0.4 707,336 + SMc03009 0.12 -0.4 707,336 + SMc03009 0.12 -0.1 707,355 - SMc03009 0.14 +0.8 707,355 - SMc03009 0.14 +0.5 707,385 - SMc03009 0.17 -0.8 707,575 + SMc03009 0.38 +0.2 707,693 + SMc03009 0.51 -1.1 708,029 + SMc03009 0.88 -1.3 708,029 + SMc03009 0.88 -0.8 708,029 + SMc03009 0.88 -0.6 708,032 - SMc03009 0.88 +0.8 708,099 - -0.8 708,222 + -0.2 708,223 - -2.4 708,397 - SMc03010 0.25 -0.7 708,471 + SMc03010 0.32 -3.2 708,808 + SMc03010 0.64 -0.8 708,846 + SMc03010 0.68 -1.2 709,087 + -1.6 709,087 + -0.1 709,088 - +0.1 709,180 + +0.2 709,181 - +0.0 709,202 - -0.9 709,776 - SMc03012 0.38 -1.0 710,024 + SMc03012 0.83 +0.4 710,024 + SMc03012 0.83 -0.1 710,025 - SMc03012 0.83 -1.2
Or see this region's nucleotide sequence