Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03004 and SMc03005 are separated by 25 nucleotides SMc03005 and SMc03006 are separated by 3 nucleotides SMc03006 and SMc03007 are separated by 20 nucleotides SMc03007 and SMc03008 are separated by 5 nucleotides SMc03008 and SMc03009 overlap by 4 nucleotides
SMc03004: SMc03004 - chemoreceptor (methyl-accepting chemotaxis protein), at 702,172 to 703,773
SMc03004
SMc03005: SMc03005 - hypothetical protein, at 703,799 to 704,092
SMc03005
SMc03006: SMc03006 - chemotaxis regulator protein, at 704,096 to 704,461
SMc03006
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
Position (kb) 704
705
706
707 Strain fitness (log2 ratio) -2
-1
0
1
2 at 703.694 kb on + strand at 703.695 kb on - strand at 703.775 kb on + strand at 703.776 kb on - strand at 703.776 kb on - strand at 704.225 kb on - strand, within SMc03006 at 704.488 kb on - strand at 704.488 kb on - strand at 705.019 kb on + strand, within SMc03007 at 705.019 kb on + strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.126 kb on + strand, within SMc03007 at 705.172 kb on + strand, within SMc03007 at 705.173 kb on - strand, within SMc03007 at 705.173 kb on - strand, within SMc03007 at 705.684 kb on + strand, within SMc03007 at 705.684 kb on + strand, within SMc03007 at 705.849 kb on + strand, within SMc03007 at 705.850 kb on - strand, within SMc03007 at 706.596 kb on - strand at 706.596 kb on - strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.619 kb on - strand at 706.619 kb on - strand at 706.689 kb on - strand at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 703,694 + -1.1 703,695 - +0.1 703,775 + +0.5 703,776 - +0.6 703,776 - -0.2 704,225 - SMc03006 0.35 -0.1 704,488 - -0.6 704,488 - +0.4 705,019 + SMc03007 0.24 -1.1 705,019 + SMc03007 0.24 -2.1 705,020 - SMc03007 0.24 +0.7 705,020 - SMc03007 0.24 +0.2 705,053 - SMc03007 0.25 +0.9 705,053 - SMc03007 0.25 -0.5 705,126 + SMc03007 0.28 -0.0 705,172 + SMc03007 0.30 -1.0 705,173 - SMc03007 0.30 -0.7 705,173 - SMc03007 0.30 +0.9 705,684 + SMc03007 0.53 +0.5 705,684 + SMc03007 0.53 -0.1 705,849 + SMc03007 0.60 +1.0 705,850 - SMc03007 0.60 -0.6 706,596 - +0.8 706,596 - -1.9 706,618 + -2.0 706,618 + -1.7 706,618 + +2.1 706,618 + -1.8 706,618 + -2.7 706,619 - -0.2 706,619 - +0.1 706,689 - +0.1 707,161 + SMc03008 0.85 +1.0 707,185 + -2.2 707,336 + SMc03009 0.12 +0.4 707,336 + SMc03009 0.12 -0.4 707,336 + SMc03009 0.12 -0.1 707,355 - SMc03009 0.14 +0.8 707,355 - SMc03009 0.14 +0.5 707,385 - SMc03009 0.17 -0.8 707,575 + SMc03009 0.38 +0.2 707,693 + SMc03009 0.51 -1.1
Or see this region's nucleotide sequence