Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02879 and SMc02880 overlap by 4 nucleotides SMc02880 and SMc02881 overlap by 4 nucleotides SMc02881 and SMc02882 are separated by 385 nucleotides
SMc02879: SMc02879 - hypothetical protein, at 235,533 to 236,270
SMc02879
SMc02880: SMc02880 - hypothetical protein, at 236,267 to 237,178
SMc02880
SMc02881: SMc02881 - hypothetical protein, at 237,175 to 238,536
SMc02881
SMc02882: SMc02882 - CysZ-like protein, at 238,922 to 239,656
SMc02882
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 236.259 kb on + strand at 236.259 kb on + strand at 236.673 kb on - strand, within SMc02880 at 237.340 kb on - strand, within SMc02881 at 237.509 kb on + strand, within SMc02881 at 237.509 kb on + strand, within SMc02881 at 237.611 kb on + strand, within SMc02881 at 237.612 kb on - strand, within SMc02881 at 237.649 kb on - strand, within SMc02881 at 237.941 kb on + strand, within SMc02881 at 238.127 kb on + strand, within SMc02881 at 238.170 kb on + strand, within SMc02881 at 238.170 kb on + strand, within SMc02881 at 238.171 kb on - strand, within SMc02881 at 238.171 kb on - strand, within SMc02881 at 238.589 kb on - strand at 238.605 kb on - strand at 238.707 kb on + strand at 238.708 kb on - strand at 238.756 kb on - strand at 238.783 kb on + strand at 238.881 kb on + strand at 238.881 kb on + strand at 238.881 kb on + strand at 238.882 kb on + strand at 238.882 kb on - strand at 238.882 kb on - strand at 239.405 kb on + strand, within SMc02882
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 236,259 + -1.5 236,259 + +0.3 236,673 - SMc02880 0.45 -0.3 237,340 - SMc02881 0.12 +0.2 237,509 + SMc02881 0.25 +1.1 237,509 + SMc02881 0.25 +0.4 237,611 + SMc02881 0.32 +1.9 237,612 - SMc02881 0.32 +0.5 237,649 - SMc02881 0.35 +0.8 237,941 + SMc02881 0.56 +0.2 238,127 + SMc02881 0.70 -0.4 238,170 + SMc02881 0.73 +1.1 238,170 + SMc02881 0.73 +0.1 238,171 - SMc02881 0.73 +0.8 238,171 - SMc02881 0.73 +1.4 238,589 - -1.1 238,605 - -0.2 238,707 + -1.6 238,708 - -1.4 238,756 - -1.4 238,783 + -1.6 238,881 + -0.1 238,881 + -0.1 238,881 + +1.1 238,882 + +0.8 238,882 - -1.8 238,882 - -1.8 239,405 + SMc02882 0.66 -0.1
Or see this region's nucleotide sequence