Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02859 and SMc02860 are separated by 4 nucleotides SMc02860 and SMc02861 are separated by 113 nucleotides SMc02861 and SMc02862 overlap by 1 nucleotides SMc02862 and SMc02863 are separated by 234 nucleotides
SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160
SMc02859
SMc02860: SMc02860 - hypothetical protein, at 214,165 to 214,800
SMc02860
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
SMc02862: SMc02862 - Pit accessory protein, at 215,918 to 216,562
SMc02862
SMc02863: SMc02863 - recombination protein F, at 216,797 to 217,921
SMc02863
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 213.971 kb on + strand, within SMc02859 at 214.066 kb on + strand, within SMc02859 at 214.384 kb on - strand, within SMc02860 at 214.384 kb on - strand, within SMc02860 at 214.616 kb on - strand, within SMc02860 at 214.742 kb on + strand at 214.742 kb on + strand at 214.743 kb on - strand at 214.816 kb on + strand at 214.817 kb on - strand at 214.867 kb on + strand at 214.867 kb on + strand at 214.868 kb on - strand at 214.868 kb on - strand at 214.869 kb on + strand at 214.870 kb on - strand at 214.940 kb on - strand at 215.270 kb on - strand, within SMc02861 at 215.363 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.783 kb on - strand, within SMc02861 at 215.997 kb on + strand, within SMc02862 at 216.017 kb on - strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.018 kb on + strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.019 kb on - strand, within SMc02862 at 216.765 kb on + strand at 216.766 kb on - strand at 216.766 kb on - strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.848 kb on + strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand at 216.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 213,971 + SMc02859 0.79 -1.2 214,066 + SMc02859 0.89 +1.1 214,384 - SMc02860 0.34 -2.0 214,384 - SMc02860 0.34 +1.7 214,616 - SMc02860 0.71 +0.0 214,742 + +0.6 214,742 + +0.2 214,743 - +0.0 214,816 + +0.1 214,817 - -0.4 214,867 + +0.4 214,867 + +3.4 214,868 - +0.7 214,868 - +0.0 214,869 + +0.1 214,870 - -0.2 214,940 - +0.4 215,270 - SMc02861 0.35 -1.8 215,363 - SMc02861 0.45 -2.2 215,783 - SMc02861 0.86 -0.8 215,783 - SMc02861 0.86 +0.1 215,997 + SMc02862 0.12 +0.4 216,017 - SMc02862 0.15 -0.7 216,018 + SMc02862 0.16 -1.1 216,018 + SMc02862 0.16 +0.3 216,018 + SMc02862 0.16 -0.1 216,019 - SMc02862 0.16 -1.1 216,019 - SMc02862 0.16 -0.5 216,019 - SMc02862 0.16 -0.4 216,019 - SMc02862 0.16 -0.2 216,019 - SMc02862 0.16 +0.4 216,765 + +0.3 216,766 - -1.0 216,766 - +0.8 216,848 + -0.1 216,848 + +0.9 216,848 + +0.0 216,848 + +0.0 216,848 + +0.3 216,849 - +0.9 216,849 - +1.0 216,849 - +1.2 216,849 - +1.3
Or see this region's nucleotide sequence