Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02825 and SMc02826 are separated by 87 nucleotides SMc02826 and SMc02827 are separated by 8 nucleotides
SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604
SMc02825
SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036
SMc02826
SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899
SMc02827
Position (kb) 173
174
175 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 172.750 kb on + strand, within SMc02825 at 172.750 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.188 kb on + strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.576 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.689 kb on - strand at 173.707 kb on - strand at 173.707 kb on - strand at 173.805 kb on - strand, within SMc02826 at 173.812 kb on + strand, within SMc02826 at 173.960 kb on + strand, within SMc02826 at 173.961 kb on - strand, within SMc02826 at 173.986 kb on + strand, within SMc02826 at 174.041 kb on - strand at 174.041 kb on - strand at 174.041 kb on - strand at 174.294 kb on + strand at 174.303 kb on + strand, within SMc02827 at 174.304 kb on - strand, within SMc02827 at 174.550 kb on - strand, within SMc02827 at 174.835 kb on + strand at 174.835 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 172,750 + SMc02825 0.39 -1.6 172,750 + SMc02825 0.39 -3.6 173,107 + SMc02825 0.64 -3.5 173,107 + SMc02825 0.64 -3.4 173,188 + SMc02825 0.70 -4.7 173,363 - SMc02825 0.83 -2.5 173,363 - SMc02825 0.83 -1.1 173,576 - -2.3 173,607 - +0.6 173,607 - +0.8 173,607 - +0.7 173,689 - +1.6 173,707 - +0.9 173,707 - -1.5 173,805 - SMc02826 0.33 +2.6 173,812 + SMc02826 0.35 +1.8 173,960 + SMc02826 0.78 +0.3 173,961 - SMc02826 0.78 +0.5 173,986 + SMc02826 0.85 +2.8 174,041 - -2.8 174,041 - -2.1 174,041 - -2.6 174,294 + +1.0 174,303 + SMc02827 0.30 -0.9 174,304 - SMc02827 0.30 -2.8 174,550 - SMc02827 0.59 -3.1 174,835 + -3.0 174,835 + -1.4 174,867 + -2.2 174,867 + -0.1 174,867 + -2.8 175,033 + -2.0 175,033 + -0.0 175,034 - +0.8
Or see this region's nucleotide sequence