Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02580 and SMc02581 are separated by 160 nucleotides SMc02581 and SMc02582 are separated by 206 nucleotides
SMc02580: SMc02580 - hypothetical protein, at 66,749 to 68,755
SMc02580
SMc02581: SMc02581 - malate synthase G, at 68,916 to 71,087
SMc02581
SMc02582: SMc02582 - hypothetical protein, at 71,294 to 72,130
SMc02582
Position (kb) 68
69
70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 67.922 kb on + strand, within SMc02580 at 67.923 kb on - strand, within SMc02580 at 67.923 kb on - strand, within SMc02580 at 68.024 kb on - strand, within SMc02580 at 68.024 kb on - strand, within SMc02580 at 68.369 kb on + strand, within SMc02580 at 68.370 kb on - strand, within SMc02580 at 68.734 kb on + strand at 68.734 kb on + strand at 68.737 kb on - strand at 68.737 kb on - strand at 68.836 kb on + strand at 68.877 kb on - strand at 68.891 kb on + strand at 68.934 kb on + strand at 69.150 kb on + strand, within SMc02581 at 69.151 kb on - strand, within SMc02581 at 69.151 kb on - strand, within SMc02581 at 69.177 kb on + strand, within SMc02581 at 69.324 kb on + strand, within SMc02581 at 69.325 kb on - strand, within SMc02581 at 69.387 kb on + strand, within SMc02581 at 69.388 kb on - strand, within SMc02581 at 69.514 kb on + strand, within SMc02581 at 69.871 kb on - strand, within SMc02581 at 69.873 kb on - strand, within SMc02581 at 69.873 kb on - strand, within SMc02581 at 70.083 kb on + strand, within SMc02581 at 70.084 kb on - strand, within SMc02581 at 70.084 kb on - strand, within SMc02581 at 70.084 kb on - strand, within SMc02581 at 70.084 kb on - strand, within SMc02581 at 70.084 kb on - strand, within SMc02581 at 70.139 kb on - strand, within SMc02581 at 70.150 kb on + strand, within SMc02581 at 70.378 kb on - strand, within SMc02581 at 70.566 kb on + strand, within SMc02581 at 70.635 kb on - strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.726 kb on - strand, within SMc02581 at 70.726 kb on - strand, within SMc02581 at 70.832 kb on + strand, within SMc02581 at 70.833 kb on - strand, within SMc02581 at 71.028 kb on + strand at 71.085 kb on + strand at 71.085 kb on + strand at 71.086 kb on - strand at 71.201 kb on - strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.469 kb on + strand, within SMc02582 at 71.526 kb on + strand, within SMc02582 at 71.605 kb on - strand, within SMc02582 at 71.658 kb on - strand, within SMc02582 at 71.682 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 72.034 kb on + strand, within SMc02582
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 67,922 + SMc02580 0.58 +0.8 67,923 - SMc02580 0.58 +0.6 67,923 - SMc02580 0.58 -2.8 68,024 - SMc02580 0.64 -1.9 68,024 - SMc02580 0.64 -0.5 68,369 + SMc02580 0.81 -1.3 68,370 - SMc02580 0.81 -1.1 68,734 + -0.5 68,734 + +0.8 68,737 - -0.3 68,737 - +0.4 68,836 + +0.7 68,877 - -1.4 68,891 + +1.3 68,934 + -0.5 69,150 + SMc02581 0.11 +0.6 69,151 - SMc02581 0.11 -0.9 69,151 - SMc02581 0.11 -1.4 69,177 + SMc02581 0.12 +0.0 69,324 + SMc02581 0.19 +0.6 69,325 - SMc02581 0.19 -1.4 69,387 + SMc02581 0.22 -0.2 69,388 - SMc02581 0.22 -0.2 69,514 + SMc02581 0.28 -0.7 69,871 - SMc02581 0.44 +0.1 69,873 - SMc02581 0.44 +0.4 69,873 - SMc02581 0.44 +1.1 70,083 + SMc02581 0.54 +0.8 70,084 - SMc02581 0.54 -1.4 70,084 - SMc02581 0.54 -1.0 70,084 - SMc02581 0.54 -0.0 70,084 - SMc02581 0.54 -1.4 70,084 - SMc02581 0.54 +0.0 70,139 - SMc02581 0.56 -2.2 70,150 + SMc02581 0.57 +0.9 70,378 - SMc02581 0.67 -1.6 70,566 + SMc02581 0.76 -2.2 70,635 - SMc02581 0.79 +0.5 70,725 + SMc02581 0.83 -2.7 70,725 + SMc02581 0.83 +0.0 70,725 + SMc02581 0.83 -0.3 70,726 - SMc02581 0.83 +0.0 70,726 - SMc02581 0.83 -0.5 70,832 + SMc02581 0.88 -3.2 70,833 - SMc02581 0.88 +0.0 71,028 + -0.8 71,085 + -2.0 71,085 + +1.9 71,086 - -0.9 71,201 - +0.4 71,343 + +0.4 71,343 + +0.5 71,343 + -0.9 71,469 + SMc02582 0.21 -0.4 71,526 + SMc02582 0.28 -3.1 71,605 - SMc02582 0.37 -2.7 71,658 - SMc02582 0.43 -0.8 71,682 + SMc02582 0.46 -1.0 71,843 + SMc02582 0.66 -1.1 71,843 + SMc02582 0.66 -1.9 71,843 + SMc02582 0.66 -1.3 72,034 + SMc02582 0.88 +0.3
Or see this region's nucleotide sequence