Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02570 and SMc02572 are separated by 32 nucleotides SMc02572 and SMc02573 overlap by 1 nucleotides SMc02573 and SMc02574 are separated by 26 nucleotides SMc02574 and SMc02575 are separated by 320 nucleotides
SMc02570: SMc02570 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 58,682 to 59,425
SMc02570
SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108
SMc02572
SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581
SMc02573
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
Position (kb)
60
61 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 59.343 kb on + strand, within SMc02570 at 59.343 kb on + strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.627 kb on + strand, within SMc02572 at 59.627 kb on + strand, within SMc02572 at 59.628 kb on - strand, within SMc02572 at 60.232 kb on + strand, within SMc02573 at 60.233 kb on - strand, within SMc02573 at 60.572 kb on - strand at 60.572 kb on - strand at 60.572 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.736 kb on - strand, within SMc02574 at 60.736 kb on - strand at 60.927 kb on + strand, within SMc02574 at 60.928 kb on - strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.264 kb on - strand at 61.348 kb on + strand at 61.348 kb on + strand at 61.349 kb on - strand at 61.368 kb on - strand at 61.466 kb on + strand at 61.467 kb on - strand at 61.467 kb on - strand at 61.470 kb on + strand at 61.471 kb on - strand at 61.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 59,343 + SMc02570 0.89 -3.0 59,343 + SMc02570 0.89 -2.1 59,344 - SMc02570 0.89 -1.3 59,344 - SMc02570 0.89 -0.7 59,627 + SMc02572 0.26 -3.3 59,627 + SMc02572 0.26 -5.4 59,628 - SMc02572 0.26 -2.2 60,232 + SMc02573 0.26 -2.7 60,233 - SMc02573 0.26 -0.9 60,572 - -0.2 60,572 - +0.2 60,572 - +0.0 60,598 - -2.8 60,598 - +0.2 60,598 - +0.7 60,736 - SMc02574 0.21 -0.6 60,736 - +0.0 60,927 + SMc02574 0.52 -2.4 60,928 - SMc02574 0.53 -1.0 61,084 + SMc02574 0.78 -4.0 61,084 + SMc02574 0.78 -2.3 61,085 - SMc02574 0.78 -2.4 61,085 - SMc02574 0.78 -1.7 61,085 - SMc02574 0.78 -2.1 61,085 - SMc02574 0.78 -0.8 61,264 - +0.7 61,348 + -1.7 61,348 + -1.8 61,349 - -2.5 61,368 - -2.8 61,466 + -0.5 61,467 - +1.6 61,467 - -0.5 61,470 + +2.1 61,471 - +1.3 61,471 - +0.8
Or see this region's nucleotide sequence