Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02365 and SMc02366 are separated by 146 nucleotides SMc02366 and SMc02367 overlap by 4 nucleotides SMc02367 and SMc02368 are separated by 34 nucleotides
SMc02365: SMc02365 - protease precursor protein, at 1,112,257 to 1,113,771
SMc02365
SMc02366: SMc02366 - transcriptional regulator, at 1,113,918 to 1,114,619
SMc02366
SMc02367: SMc02367 - sensor histidine kinase transmembrane protein, at 1,114,616 to 1,116,013
SMc02367
SMc02368: SMc02368 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 1,116,048 to 1,119,008
SMc02368
Position (kb)
1114
1115
1116
1117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1113.820 kb on + strand at 1113.820 kb on + strand at 1113.820 kb on + strand at 1113.820 kb on + strand at 1113.820 kb on + strand at 1113.820 kb on + strand at 1113.821 kb on - strand at 1113.821 kb on - strand at 1113.821 kb on - strand at 1113.918 kb on - strand at 1113.918 kb on - strand at 1113.918 kb on - strand at 1113.918 kb on - strand at 1113.972 kb on + strand at 1113.972 kb on + strand at 1113.973 kb on - strand at 1113.973 kb on - strand at 1113.973 kb on - strand at 1114.039 kb on + strand, within SMc02366 at 1114.039 kb on + strand, within SMc02366 at 1114.040 kb on - strand, within SMc02366 at 1114.040 kb on - strand, within SMc02366 at 1114.063 kb on - strand, within SMc02366 at 1114.063 kb on - strand, within SMc02366 at 1114.221 kb on + strand, within SMc02366 at 1114.221 kb on + strand, within SMc02366 at 1114.221 kb on + strand, within SMc02366 at 1114.222 kb on - strand, within SMc02366 at 1114.236 kb on + strand, within SMc02366 at 1114.237 kb on - strand, within SMc02366 at 1114.237 kb on - strand, within SMc02366 at 1114.284 kb on - strand, within SMc02366 at 1114.312 kb on - strand, within SMc02366 at 1114.411 kb on - strand, within SMc02366 at 1114.473 kb on + strand, within SMc02366 at 1114.473 kb on + strand, within SMc02366 at 1114.473 kb on + strand, within SMc02366 at 1114.473 kb on + strand, within SMc02366 at 1114.473 kb on + strand, within SMc02366 at 1114.474 kb on - strand, within SMc02366 at 1114.584 kb on + strand at 1114.584 kb on + strand at 1114.585 kb on - strand at 1114.585 kb on - strand at 1114.712 kb on + strand at 1114.712 kb on + strand at 1114.712 kb on + strand at 1114.713 kb on - strand at 1114.776 kb on + strand, within SMc02367 at 1114.797 kb on - strand, within SMc02367 at 1114.797 kb on - strand, within SMc02367 at 1114.869 kb on - strand, within SMc02367 at 1115.052 kb on + strand, within SMc02367 at 1115.053 kb on - strand, within SMc02367 at 1115.358 kb on + strand, within SMc02367 at 1115.358 kb on + strand, within SMc02367 at 1115.358 kb on + strand, within SMc02367 at 1115.359 kb on - strand, within SMc02367 at 1115.488 kb on + strand, within SMc02367 at 1115.489 kb on - strand, within SMc02367 at 1115.489 kb on - strand, within SMc02367 at 1115.721 kb on - strand, within SMc02367 at 1115.748 kb on + strand, within SMc02367 at 1116.015 kb on - strand at 1116.015 kb on - strand at 1116.260 kb on + strand at 1116.649 kb on - strand, within SMc02368 at 1116.678 kb on + strand, within SMc02368 at 1116.679 kb on - strand, within SMc02368 at 1116.786 kb on + strand, within SMc02368 at 1116.786 kb on + strand, within SMc02368 at 1116.786 kb on + strand, within SMc02368 at 1116.868 kb on - strand, within SMc02368 at 1116.868 kb on - strand, within SMc02368 at 1116.868 kb on - strand, within SMc02368 at 1116.990 kb on + strand, within SMc02368 at 1117.000 kb on - strand, within SMc02368
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,113,820 + +4.7 1,113,820 + +4.8 1,113,820 + +5.4 1,113,820 + +4.7 1,113,820 + +4.7 1,113,820 + +4.8 1,113,821 - +1.7 1,113,821 - +2.1 1,113,821 - -0.3 1,113,918 - +3.4 1,113,918 - +3.4 1,113,918 - +3.3 1,113,918 - +3.3 1,113,972 + +3.5 1,113,972 + +2.6 1,113,973 - +3.1 1,113,973 - +3.0 1,113,973 - +3.7 1,114,039 + SMc02366 0.17 +2.2 1,114,039 + SMc02366 0.17 +3.1 1,114,040 - SMc02366 0.17 +4.1 1,114,040 - SMc02366 0.17 +3.3 1,114,063 - SMc02366 0.21 +3.5 1,114,063 - SMc02366 0.21 +3.6 1,114,221 + SMc02366 0.43 +3.4 1,114,221 + SMc02366 0.43 +3.4 1,114,221 + SMc02366 0.43 +3.6 1,114,222 - SMc02366 0.43 +3.3 1,114,236 + SMc02366 0.45 +4.1 1,114,237 - SMc02366 0.45 +3.3 1,114,237 - SMc02366 0.45 +3.2 1,114,284 - SMc02366 0.52 +3.8 1,114,312 - SMc02366 0.56 +3.5 1,114,411 - SMc02366 0.70 +2.3 1,114,473 + SMc02366 0.79 +3.4 1,114,473 + SMc02366 0.79 +3.6 1,114,473 + SMc02366 0.79 +3.5 1,114,473 + SMc02366 0.79 +3.7 1,114,473 + SMc02366 0.79 +3.8 1,114,474 - SMc02366 0.79 +3.5 1,114,584 + +3.6 1,114,584 + +3.4 1,114,585 - +3.3 1,114,585 - +3.3 1,114,712 + +3.6 1,114,712 + +4.1 1,114,712 + +3.7 1,114,713 - +3.2 1,114,776 + SMc02367 0.11 +3.9 1,114,797 - SMc02367 0.13 +3.7 1,114,797 - SMc02367 0.13 +3.6 1,114,869 - SMc02367 0.18 +3.6 1,115,052 + SMc02367 0.31 +3.6 1,115,053 - SMc02367 0.31 +2.8 1,115,358 + SMc02367 0.53 +3.8 1,115,358 + SMc02367 0.53 +4.2 1,115,358 + SMc02367 0.53 +4.1 1,115,359 - SMc02367 0.53 +3.6 1,115,488 + SMc02367 0.62 +2.8 1,115,489 - SMc02367 0.62 +3.2 1,115,489 - SMc02367 0.62 +3.7 1,115,721 - SMc02367 0.79 +3.2 1,115,748 + SMc02367 0.81 +3.6 1,116,015 - -1.7 1,116,015 - +2.6 1,116,260 + -1.0 1,116,649 - SMc02368 0.20 -1.4 1,116,678 + SMc02368 0.21 -0.4 1,116,679 - SMc02368 0.21 -0.1 1,116,786 + SMc02368 0.25 -0.2 1,116,786 + SMc02368 0.25 -2.4 1,116,786 + SMc02368 0.25 -0.9 1,116,868 - SMc02368 0.28 -3.2 1,116,868 - SMc02368 0.28 -0.3 1,116,868 - SMc02368 0.28 -1.5 1,116,990 + SMc02368 0.32 -0.6 1,117,000 - SMc02368 0.32 -1.0
Or see this region's nucleotide sequence