Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02176 and SMc02175 are separated by 61 nucleotides SMc02175 and SMc02174 are separated by 235 nucleotides SMc02174 and SMc02173 are separated by 66 nucleotides
SMc02176: SMc02176 - adenylate cyclase transmembrane protein, at 518,501 to 520,372
SMc02176
SMc02175: SMc02175 - transcriptional regulator, at 520,434 to 521,138
SMc02175
SMc02174: SMc02174 - hypothetical protein, at 521,374 to 521,811
SMc02174
SMc02173: SMc02173 - hypothetical protein, at 521,878 to 522,306
SMc02173
Position (kb) 520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 519.783 kb on + strand, within SMc02176 at 519.800 kb on + strand, within SMc02176 at 520.186 kb on - strand at 520.186 kb on - strand at 520.192 kb on + strand at 520.193 kb on - strand at 520.193 kb on - strand at 520.305 kb on + strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.306 kb on - strand at 520.383 kb on - strand at 520.383 kb on - strand at 520.690 kb on + strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.817 kb on - strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.984 kb on + strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 520.985 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.056 kb on - strand, within SMc02175 at 521.092 kb on - strand at 521.092 kb on - strand at 521.278 kb on - strand at 521.311 kb on + strand at 521.333 kb on + strand at 521.333 kb on + strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.429 kb on + strand, within SMc02174 at 521.430 kb on - strand, within SMc02174 at 521.475 kb on + strand, within SMc02174 at 521.590 kb on + strand at 521.591 kb on - strand, within SMc02174 at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.886 kb on - strand at 521.918 kb on + strand at 521.973 kb on - strand, within SMc02173 at 522.137 kb on - strand, within SMc02173
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 519,783 + SMc02176 0.68 -3.2 519,800 + SMc02176 0.69 -0.7 520,186 - +0.8 520,186 - -1.4 520,192 + +0.2 520,193 - -0.5 520,193 - -2.8 520,305 + +1.0 520,306 - -3.0 520,306 - -3.1 520,306 - +0.7 520,306 - -1.3 520,383 - -1.0 520,383 - -0.3 520,690 + SMc02175 0.36 +0.3 520,817 - SMc02175 0.54 +1.9 520,817 - SMc02175 0.54 +2.3 520,817 - SMc02175 0.54 +2.0 520,984 + SMc02175 0.78 +2.5 520,984 + SMc02175 0.78 +1.0 520,985 - SMc02175 0.78 +1.6 520,985 - SMc02175 0.78 +2.6 521,056 - SMc02175 0.88 +1.5 521,056 - SMc02175 0.88 +1.6 521,092 - +1.4 521,092 - -0.9 521,278 - -1.6 521,311 + -1.7 521,333 + -1.2 521,333 + -0.3 521,334 - -1.1 521,334 - -1.7 521,334 - -0.2 521,429 + SMc02174 0.13 +0.9 521,430 - SMc02174 0.13 -1.3 521,475 + SMc02174 0.23 -0.1 521,590 + -0.5 521,591 - SMc02174 0.50 +0.2 521,885 + -1.1 521,885 + +0.1 521,885 + -0.1 521,885 + -0.3 521,885 + -2.1 521,886 - -2.0 521,918 + +0.1 521,973 - SMc02173 0.22 +1.0 522,137 - SMc02173 0.60 +1.1
Or see this region's nucleotide sequence