Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02169 and SMc02167 overlap by 4 nucleotides SMc02167 and SMc02166 are separated by 189 nucleotides SMc02166 and SMc02165 are separated by 17 nucleotides SMc02165 and SMc02164 are separated by 56 nucleotides
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
SMc02165: SMc02165 - orotate phosphoribosyltransferase, at 528,931 to 529,629
SMc02165
SMc02164: SMc02164 - fructokinase, at 529,686 to 530,612
SMc02164
Position (kb) 527
528
529 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 527.152 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.429 kb on - strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.502 kb on - strand, within SMc02167 at 527.561 kb on + strand, within SMc02167 at 527.574 kb on - strand, within SMc02167 at 527.604 kb on - strand, within SMc02167 at 527.616 kb on + strand, within SMc02167 at 527.617 kb on - strand, within SMc02167 at 527.679 kb on - strand at 527.884 kb on + strand at 527.885 kb on - strand at 527.885 kb on - strand at 527.887 kb on - strand at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.170 kb on + strand, within SMc02166 at 528.171 kb on - strand, within SMc02166 at 528.417 kb on - strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.518 kb on + strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 529.030 kb on + strand, within SMc02165 at 529.065 kb on + strand, within SMc02165 at 529.091 kb on - strand, within SMc02165 at 529.195 kb on - strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.248 kb on - strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.295 kb on - strand, within SMc02165 at 529.297 kb on - strand, within SMc02165 at 529.423 kb on + strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.665 kb on + strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.851 kb on - strand, within SMc02164
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 527,152 + SMc02167 0.15 +0.8 527,428 + SMc02167 0.59 -2.8 527,428 + SMc02167 0.59 -2.3 527,428 + SMc02167 0.59 +0.6 527,428 + SMc02167 0.59 -1.8 527,429 - SMc02167 0.59 -0.4 527,450 + SMc02167 0.63 -0.7 527,450 + SMc02167 0.63 +0.9 527,450 + SMc02167 0.63 -0.7 527,502 - SMc02167 0.71 +0.5 527,561 + SMc02167 0.81 +0.5 527,574 - SMc02167 0.83 +1.2 527,604 - SMc02167 0.88 -0.8 527,616 + SMc02167 0.90 -1.9 527,617 - SMc02167 0.90 -1.1 527,679 - +0.4 527,884 + -2.5 527,885 - -2.1 527,885 - -2.2 527,887 - -0.4 528,096 - SMc02166 0.22 -2.4 528,096 - SMc02166 0.22 -1.4 528,096 - SMc02166 0.22 -0.7 528,170 + SMc02166 0.29 -0.8 528,171 - SMc02166 0.29 -1.1 528,417 - SMc02166 0.52 -2.6 528,515 + SMc02166 0.62 +2.4 528,515 + SMc02166 0.62 -2.4 528,516 - SMc02166 0.62 -1.7 528,516 - SMc02166 0.62 -1.3 528,518 + SMc02166 0.62 -1.8 528,519 - SMc02166 0.62 -1.6 528,519 - SMc02166 0.62 -2.2 528,665 + SMc02166 0.76 -1.9 528,665 + SMc02166 0.76 +0.2 528,665 + SMc02166 0.76 -0.6 528,666 - SMc02166 0.76 -0.1 528,666 - SMc02166 0.76 +2.1 529,030 + SMc02165 0.14 -4.3 529,065 + SMc02165 0.19 -0.2 529,091 - SMc02165 0.23 -1.9 529,195 - SMc02165 0.38 -1.9 529,243 + SMc02165 0.45 -1.5 529,243 + SMc02165 0.45 -2.5 529,243 + SMc02165 0.45 -2.8 529,243 + SMc02165 0.45 -1.3 529,243 + SMc02165 0.45 -1.2 529,244 - SMc02165 0.45 -1.5 529,244 - SMc02165 0.45 -3.7 529,248 - SMc02165 0.45 -1.3 529,294 + SMc02165 0.52 -3.0 529,294 + SMc02165 0.52 -2.4 529,294 + SMc02165 0.52 -3.0 529,294 + SMc02165 0.52 -0.8 529,295 - SMc02165 0.52 -2.1 529,297 - SMc02165 0.52 -1.4 529,423 + SMc02165 0.70 -2.7 529,424 - SMc02165 0.71 -1.2 529,424 - SMc02165 0.71 -0.5 529,480 + SMc02165 0.79 -3.5 529,480 + SMc02165 0.79 -3.0 529,481 - SMc02165 0.79 -3.1 529,481 - SMc02165 0.79 -2.6 529,665 + +1.3 529,666 - +1.3 529,666 - -1.2 529,666 - -0.6 529,666 - +0.5 529,666 - -0.7 529,851 - SMc02164 0.18 -0.5
Or see this region's nucleotide sequence