Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02149 and SMc02148 are separated by 17 nucleotides SMc02148 and SMc02147 are separated by 213 nucleotides
SMc02149: SMc02149 - hypothetical protein, at 562,964 to 564,124
SMc02149
SMc02148: SMc02148 - hypothetical protein, at 564,142 to 565,044
SMc02148
SMc02147: SMc02147 - phosphate regulon sensor histidine kinase transmembrane protein, at 565,258 to 566,520
SMc02147
Position (kb) 564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 563.238 kb on + strand, within SMc02149 at 563.239 kb on - strand, within SMc02149 at 564.219 kb on - strand at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.347 kb on + strand, within SMc02148 at 564.348 kb on - strand, within SMc02148 at 564.591 kb on - strand, within SMc02148 at 564.644 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.657 kb on - strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.893 kb on + strand, within SMc02148 at 565.089 kb on + strand at 565.089 kb on + strand at 565.089 kb on + strand at 565.138 kb on + strand at 565.272 kb on + strand at 565.614 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.744 kb on + strand, within SMc02147 at 565.744 kb on + strand, within SMc02147 at 565.745 kb on - strand, within SMc02147 at 565.745 kb on - strand, within SMc02147 at 565.814 kb on - strand, within SMc02147
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 563,238 + SMc02149 0.24 -4.3 563,239 - SMc02149 0.24 -2.9 564,219 - +0.3 564,327 + SMc02148 0.20 +0.4 564,327 + SMc02148 0.20 +0.1 564,327 + SMc02148 0.20 +0.8 564,347 + SMc02148 0.23 -0.3 564,348 - SMc02148 0.23 -0.7 564,591 - SMc02148 0.50 +1.1 564,644 + SMc02148 0.56 -1.4 564,656 + SMc02148 0.57 +2.9 564,656 + SMc02148 0.57 +1.0 564,657 - SMc02148 0.57 +0.3 564,723 + SMc02148 0.64 -2.6 564,723 + SMc02148 0.64 -0.2 564,723 + SMc02148 0.64 +1.8 564,723 + SMc02148 0.64 -0.0 564,724 - SMc02148 0.64 +0.0 564,724 - SMc02148 0.64 -0.5 564,724 - SMc02148 0.64 +0.3 564,724 - SMc02148 0.64 +1.2 564,893 + SMc02148 0.83 +1.0 565,089 + -0.4 565,089 + -1.6 565,089 + -0.1 565,138 + -0.3 565,272 + -2.4 565,614 + SMc02147 0.28 -1.6 565,630 + SMc02147 0.29 -3.6 565,630 + SMc02147 0.29 -3.1 565,630 + SMc02147 0.29 -0.5 565,631 - SMc02147 0.30 -2.9 565,631 - SMc02147 0.30 -4.3 565,631 - SMc02147 0.30 -3.9 565,744 + SMc02147 0.38 -3.8 565,744 + SMc02147 0.38 -3.5 565,745 - SMc02147 0.39 -1.3 565,745 - SMc02147 0.39 -1.0 565,814 - SMc02147 0.44 -1.4
Or see this region's nucleotide sequence