Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01803 and SMc01804 are separated by 2 nucleotides SMc01804 and SMc01805 are separated by 218 nucleotides SMc01805 and SMc01806 are separated by 168 nucleotides
SMc01803: SMc01803 - 30S ribosomal protein S9, at 1,350,279 to 1,350,746
SMc01803
SMc01804: SMc01804 - 50S ribosomal protein L13, at 1,350,749 to 1,351,213
SMc01804
SMc01805: SMc01805 - hypothetical protein, at 1,351,432 to 1,351,863
SMc01805
SMc01806: SMc01806 - enoyl-CoA hydratase, at 1,352,032 to 1,352,853
SMc01806
Position (kb)
1351
1352 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1351.498 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.551 kb on + strand, within SMc01805 at 1351.552 kb on - strand, within SMc01805 at 1351.633 kb on - strand, within SMc01805 at 1351.651 kb on - strand, within SMc01805 at 1351.653 kb on - strand, within SMc01805 at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.879 kb on + strand at 1351.880 kb on - strand at 1351.901 kb on + strand at 1351.943 kb on + strand at 1351.943 kb on + strand at 1351.943 kb on + strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1351.944 kb on - strand at 1352.113 kb on - strand at 1352.113 kb on - strand at 1352.113 kb on - strand at 1352.499 kb on + strand, within SMc01806 at 1352.499 kb on + strand, within SMc01806 at 1352.500 kb on - strand, within SMc01806 at 1352.629 kb on + strand, within SMc01806 at 1352.629 kb on + strand, within SMc01806 at 1352.714 kb on - strand, within SMc01806 at 1352.714 kb on - strand, within SMc01806 at 1352.714 kb on - strand, within SMc01806 at 1352.714 kb on - strand, within SMc01806 at 1352.746 kb on + strand, within SMc01806 at 1352.747 kb on - strand, within SMc01806 at 1352.805 kb on + strand at 1352.851 kb on + strand at 1352.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,351,498 + SMc01805 0.15 -0.0 1,351,551 + SMc01805 0.28 -0.7 1,351,551 + SMc01805 0.28 -0.9 1,351,551 + SMc01805 0.28 -0.3 1,351,552 - SMc01805 0.28 +0.1 1,351,633 - SMc01805 0.47 +2.8 1,351,651 - SMc01805 0.51 +1.1 1,351,653 - SMc01805 0.51 -1.5 1,351,879 + -0.5 1,351,879 + +0.1 1,351,879 + -0.9 1,351,879 + -1.1 1,351,880 - +0.4 1,351,901 + -1.1 1,351,943 + -0.4 1,351,943 + +0.6 1,351,943 + +0.6 1,351,944 - +0.1 1,351,944 - +1.2 1,351,944 - -2.8 1,351,944 - -1.1 1,352,113 - -1.3 1,352,113 - -0.2 1,352,113 - -0.8 1,352,499 + SMc01806 0.57 -0.7 1,352,499 + SMc01806 0.57 +0.5 1,352,500 - SMc01806 0.57 -2.7 1,352,629 + SMc01806 0.73 +1.8 1,352,629 + SMc01806 0.73 -1.5 1,352,714 - SMc01806 0.83 -0.3 1,352,714 - SMc01806 0.83 -1.1 1,352,714 - SMc01806 0.83 -0.1 1,352,714 - SMc01806 0.83 -1.0 1,352,746 + SMc01806 0.87 +0.0 1,352,747 - SMc01806 0.87 -0.6 1,352,805 + +0.7 1,352,851 + -1.2 1,352,851 + +0.9
Or see this region's nucleotide sequence