Strain Fitness in Sinorhizobium meliloti 1021 around SMc01553
Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
2,492,894 | + | SMc01552 | 0.19 | -1.1 | |
2,492,959 | + | SMc01552 | 0.24 | -0.3 | |
2,492,959 | + | SMc01552 | 0.24 | +0.2 | |
2,492,959 | + | SMc01552 | 0.24 | +0.3 | |
2,492,959 | + | SMc01552 | 0.24 | -1.2 | |
2,493,008 | - | SMc01552 | 0.29 | +0.2 | |
2,493,008 | - | SMc01552 | 0.29 | -0.5 | |
2,493,020 | - | SMc01552 | 0.30 | +0.3 | |
2,493,115 | + | SMc01552 | 0.38 | +0.0 | |
2,493,115 | + | SMc01552 | 0.38 | -1.0 | |
2,493,115 | + | SMc01552 | 0.38 | +0.7 | |
2,493,157 | + | SMc01552 | 0.42 | -0.4 | |
2,493,163 | + | SMc01552 | 0.42 | +0.8 | |
2,493,163 | + | SMc01552 | 0.42 | -0.6 | |
2,493,163 | + | SMc01552 | 0.42 | +0.0 | |
2,493,164 | - | SMc01552 | 0.42 | +0.9 | |
2,493,251 | - | SMc01552 | 0.50 | -0.2 | |
2,493,251 | - | SMc01552 | 0.50 | +0.4 | |
2,493,251 | - | SMc01552 | 0.50 | +1.3 | |
2,493,356 | - | SMc01552 | 0.59 | -2.4 | |
2,493,477 | - | SMc01552 | 0.69 | +0.0 | |
2,493,499 | + | SMc01552 | 0.71 | -0.9 | |
2,493,752 | - | +0.0 | |||
2,493,909 | - | -0.5 | |||
2,493,909 | - | -0.5 | |||
2,493,953 | + | SMc01553 | 0.25 | -0.3 | |
2,494,105 | + | SMc01553 | 0.86 | -2.3 | |
2,494,105 | + | SMc01553 | 0.86 | -0.9 | |
2,494,891 | + | SMc01554 | 0.37 | +2.2 | |
2,495,013 | + | SMc01554 | 0.43 | +0.2 |
Or see this region's nucleotide sequence