Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01530 and SMc01529 are separated by 227 nucleotides SMc01529 and SMc01528 overlap by 4 nucleotides SMc01528 and SMc01527 overlap by 4 nucleotides SMc01527 and SMc01526 overlap by 4 nucleotides
SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595
SMc01530
SMc01529: SMc01529 - peptide ABC transporter ATP-binding protein, at 2,603,823 to 2,604,590
SMc01529
SMc01528: SMc01528 - peptide ABC transporter ATP-binding protein, at 2,604,587 to 2,605,420
SMc01528
SMc01527: SMc01527 - peptide ABC transporter permease, at 2,605,417 to 2,606,349
SMc01527
SMc01526: SMc01526 - peptide ABC transporter permease, at 2,606,346 to 2,607,389
SMc01526
Position (kb)
2604
2605
2606 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2603.715 kb on - strand at 2603.792 kb on + strand at 2603.887 kb on + strand at 2603.887 kb on + strand at 2604.359 kb on - strand, within SMc01529 at 2604.676 kb on + strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.678 kb on + strand, within SMc01528 at 2604.738 kb on + strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2605.123 kb on - strand, within SMc01528 at 2605.361 kb on + strand at 2605.362 kb on - strand at 2605.748 kb on + strand, within SMc01527 at 2605.749 kb on - strand, within SMc01527 at 2606.039 kb on - strand, within SMc01527 at 2606.087 kb on + strand, within SMc01527 at 2606.087 kb on + strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.250 kb on + strand, within SMc01527 at 2606.251 kb on - strand, within SMc01527 at 2606.253 kb on - strand, within SMc01527
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 2,603,715 - +0.2 2,603,792 + +0.5 2,603,887 + +0.2 2,603,887 + -0.3 2,604,359 - SMc01529 0.70 +0.8 2,604,676 + SMc01528 0.11 -0.8 2,604,677 - SMc01528 0.11 +0.6 2,604,677 - SMc01528 0.11 +0.2 2,604,678 + SMc01528 0.11 +1.7 2,604,738 + SMc01528 0.18 +0.8 2,604,739 - SMc01528 0.18 +0.6 2,604,739 - SMc01528 0.18 -0.0 2,605,123 - SMc01528 0.64 -0.3 2,605,361 + -2.1 2,605,362 - +0.8 2,605,748 + SMc01527 0.35 -0.8 2,605,749 - SMc01527 0.36 +0.7 2,606,039 - SMc01527 0.67 -0.0 2,606,087 + SMc01527 0.72 +1.0 2,606,087 + SMc01527 0.72 +1.4 2,606,088 - SMc01527 0.72 -1.0 2,606,088 - SMc01527 0.72 +0.8 2,606,088 - SMc01527 0.72 +0.2 2,606,088 - SMc01527 0.72 +0.2 2,606,250 + SMc01527 0.89 -3.4 2,606,251 - SMc01527 0.89 +0.4 2,606,253 - SMc01527 0.90 -0.4
Or see this region's nucleotide sequence