Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01374 and SMc01373 are separated by 130 nucleotides SMc01373 and SMc01372 are separated by 206 nucleotides SMc01372 and SMc01371 are separated by 156 nucleotides
SMc01374: SMc01374 - hypothetical protein, at 1,406,436 to 1,407,662
SMc01374
SMc01373: SMc01373 - DNA polymerase IV, at 1,407,793 to 1,409,085
SMc01373
SMc01372: SMc01372 - hypothetical protein, at 1,409,292 to 1,409,561
SMc01372
SMc01371: SMc01371 - 2-component receiver domain-containing protein, at 1,409,718 to 1,410,089
SMc01371
Position (kb)
1407
1408
1409
1410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1406.883 kb on + strand, within SMc01374 at 1406.990 kb on + strand, within SMc01374 at 1407.252 kb on + strand, within SMc01374 at 1407.387 kb on - strand, within SMc01374 at 1407.421 kb on + strand, within SMc01374 at 1407.421 kb on + strand, within SMc01374 at 1407.422 kb on - strand, within SMc01374 at 1407.422 kb on - strand, within SMc01374 at 1407.667 kb on + strand at 1407.668 kb on - strand at 1407.668 kb on - strand at 1407.727 kb on - strand at 1407.740 kb on + strand at 1407.755 kb on + strand at 1407.755 kb on + strand at 1407.794 kb on + strand at 1407.794 kb on + strand at 1408.186 kb on + strand, within SMc01373 at 1408.298 kb on + strand, within SMc01373 at 1408.299 kb on - strand, within SMc01373 at 1408.299 kb on - strand, within SMc01373 at 1408.535 kb on + strand, within SMc01373 at 1408.577 kb on - strand, within SMc01373 at 1408.664 kb on - strand, within SMc01373 at 1408.733 kb on + strand, within SMc01373 at 1408.794 kb on + strand, within SMc01373 at 1408.794 kb on + strand, within SMc01373 at 1408.832 kb on + strand, within SMc01373 at 1408.833 kb on - strand, within SMc01373 at 1408.925 kb on + strand, within SMc01373 at 1408.926 kb on - strand, within SMc01373 at 1408.926 kb on - strand, within SMc01373 at 1408.926 kb on - strand, within SMc01373 at 1409.086 kb on - strand at 1409.117 kb on - strand at 1409.281 kb on - strand at 1409.565 kb on - strand at 1409.597 kb on - strand at 1409.601 kb on - strand at 1409.682 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,406,883 + SMc01374 0.36 -0.0 1,406,990 + SMc01374 0.45 -2.0 1,407,252 + SMc01374 0.67 -0.8 1,407,387 - SMc01374 0.78 -1.1 1,407,421 + SMc01374 0.80 -1.3 1,407,421 + SMc01374 0.80 +0.4 1,407,422 - SMc01374 0.80 +0.2 1,407,422 - SMc01374 0.80 -1.8 1,407,667 + -1.7 1,407,668 - -2.1 1,407,668 - -1.5 1,407,727 - +0.2 1,407,740 + -1.7 1,407,755 + -1.1 1,407,755 + -2.5 1,407,794 + -0.0 1,407,794 + +0.6 1,408,186 + SMc01373 0.30 -2.5 1,408,298 + SMc01373 0.39 -0.2 1,408,299 - SMc01373 0.39 -2.2 1,408,299 - SMc01373 0.39 +0.1 1,408,535 + SMc01373 0.57 +0.9 1,408,577 - SMc01373 0.61 -0.8 1,408,664 - SMc01373 0.67 +0.4 1,408,733 + SMc01373 0.73 -0.3 1,408,794 + SMc01373 0.77 -1.8 1,408,794 + SMc01373 0.77 -0.1 1,408,832 + SMc01373 0.80 -1.2 1,408,833 - SMc01373 0.80 -1.2 1,408,925 + SMc01373 0.88 -1.4 1,408,926 - SMc01373 0.88 +1.9 1,408,926 - SMc01373 0.88 +0.3 1,408,926 - SMc01373 0.88 +0.6 1,409,086 - +0.5 1,409,117 - -2.2 1,409,281 - +0.7 1,409,565 - +2.6 1,409,597 - +2.5 1,409,601 - +2.1 1,409,682 + -3.4
Or see this region's nucleotide sequence