Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01363 and SMc01362 overlap by 1 nucleotides SMc01362 and SMc01361 are separated by 29 nucleotides SMc01361 and SMc01360 overlap by 4 nucleotides
SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042
SMc01363
SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653
SMc01362
SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975
SMc01361
SMc01360: SMc01360 - aspartate carbamoyltransferase catalytic subunit, at 1,422,972 to 1,423,913
SMc01360
Position (kb)
1421
1422
1423 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1421.715 kb on - strand at 1421.715 kb on - strand at 1421.923 kb on + strand, within SMc01361 at 1421.924 kb on - strand, within SMc01361 at 1421.939 kb on + strand, within SMc01361 at 1422.055 kb on - strand, within SMc01361 at 1422.272 kb on + strand, within SMc01361 at 1422.272 kb on + strand, within SMc01361 at 1422.453 kb on - strand, within SMc01361 at 1422.842 kb on - strand, within SMc01361 at 1422.842 kb on - strand, within SMc01361 at 1422.879 kb on + strand at 1423.181 kb on - strand, within SMc01360 at 1423.181 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.193 kb on - strand, within SMc01360
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,421,715 - -3.6 1,421,715 - -2.7 1,421,923 + SMc01361 0.19 -1.4 1,421,924 - SMc01361 0.19 -3.4 1,421,939 + SMc01361 0.20 -3.0 1,422,055 - SMc01361 0.29 -2.7 1,422,272 + SMc01361 0.46 -2.1 1,422,272 + SMc01361 0.46 -0.9 1,422,453 - SMc01361 0.60 -3.0 1,422,842 - SMc01361 0.90 -3.0 1,422,842 - SMc01361 0.90 -2.1 1,422,879 + -3.3 1,423,181 - SMc01360 0.22 -2.7 1,423,181 - SMc01360 0.22 -1.0 1,423,184 - SMc01360 0.23 -3.2 1,423,184 - SMc01360 0.23 -0.5 1,423,184 - SMc01360 0.23 -0.2 1,423,193 - SMc01360 0.23 -2.3
Or see this region's nucleotide sequence