Strain Fitness in Sinorhizobium meliloti 1021 around SMc01353

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01355 and SMc01354 are separated by 123 nucleotidesSMc01354 and SMc01353 are separated by 104 nucleotidesSMc01353 and SMc01352 are separated by 48 nucleotides SMc01355: SMc01355 - Holliday junction resolvase-like protein, at 1,427,252 to 1,427,749 SMc01355 SMc01354: SMc01354 - metal-dependent hydrolase, at 1,427,873 to 1,428,577 SMc01354 SMc01353: SMc01353 - aspartyl/glutamyl-tRNA amidotransferase subunit C, at 1,428,682 to 1,428,969 SMc01353 SMc01352: SMc01352 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 1,429,018 to 1,430,499 SMc01352 Position (kb) 1428 1429Strain fitness (log2 ratio) -2 -1 0 1 2at 1427.793 kb on + strandat 1427.793 kb on + strandat 1427.794 kb on - strandat 1427.794 kb on - strandat 1427.794 kb on - strandat 1427.810 kb on + strandat 1427.810 kb on + strandat 1427.811 kb on - strandat 1427.811 kb on - strandat 1427.811 kb on - strandat 1427.908 kb on + strandat 1427.937 kb on + strandat 1427.938 kb on - strandat 1428.060 kb on + strand, within SMc01354at 1428.152 kb on - strand, within SMc01354at 1428.152 kb on - strand, within SMc01354at 1428.299 kb on + strand, within SMc01354at 1428.300 kb on - strand, within SMc01354at 1428.300 kb on - strand, within SMc01354at 1428.467 kb on + strand, within SMc01354at 1428.575 kb on + strandat 1428.575 kb on + strandat 1428.575 kb on + strandat 1428.576 kb on - strandat 1428.576 kb on - strandat 1428.646 kb on + strandat 1428.646 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,427,793 + -1.2
1,427,793 + -1.2
1,427,794 - -0.6
1,427,794 - -0.1
1,427,794 - +0.3
1,427,810 + -1.3
1,427,810 + -1.1
1,427,811 - +0.3
1,427,811 - +0.0
1,427,811 - -2.2
1,427,908 + -1.5
1,427,937 + +1.0
1,427,938 - +1.9
1,428,060 + SMc01354 0.27 -0.3
1,428,152 - SMc01354 0.40 -0.0
1,428,152 - SMc01354 0.40 -2.4
1,428,299 + SMc01354 0.60 -0.7
1,428,300 - SMc01354 0.61 +1.3
1,428,300 - SMc01354 0.61 -1.0
1,428,467 + SMc01354 0.84 -0.2
1,428,575 + -1.1
1,428,575 + -0.5
1,428,575 + -1.5
1,428,576 - +0.3
1,428,576 - -1.3
1,428,646 + +0.7
1,428,646 + -0.7

Or see this region's nucleotide sequence