Strain Fitness in Sinorhizobium meliloti 1021 around SMc01350

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01352 and SMc01351 are separated by 103 nucleotidesSMc01351 and SMc01350 are separated by 286 nucleotidesSMc01350 and SMc01349 are separated by 2 nucleotidesSMc01349 and SMc01348 are separated by 161 nucleotides SMc01352: SMc01352 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 1,429,018 to 1,430,499 SMc01352 SMc01351: SMc01351 - hypothetical protein, at 1,430,603 to 1,430,857 SMc01351 SMc01350: SMc01350 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,431,144 to 1,432,694 SMc01350 SMc01349: SMc01349 - hypothetical protein, at 1,432,697 to 1,433,194 SMc01349 SMc01348: SMc01348 - NADH dehydrogenase, at 1,433,356 to 1,433,757 SMc01348 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -3 -2 -1 0 1at 1430.567 kb on + strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.568 kb on - strandat 1430.704 kb on + strand, within SMc01351at 1430.733 kb on + strand, within SMc01351at 1430.753 kb on - strand, within SMc01351at 1430.861 kb on + strandat 1430.877 kb on - strandat 1431.004 kb on + strandat 1431.004 kb on + strandat 1431.005 kb on - strandat 1431.005 kb on - strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.008 kb on + strandat 1431.120 kb on + strandat 1432.775 kb on + strand, within SMc01349at 1432.775 kb on + strand, within SMc01349at 1432.788 kb on - strand, within SMc01349at 1432.788 kb on - strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.967 kb on + strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1432.968 kb on - strand, within SMc01349at 1433.614 kb on + strand, within SMc01348at 1433.615 kb on - strand, within SMc01348

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,430,567 + -1.4
1,430,568 - +0.2
1,430,568 - -0.8
1,430,568 - -0.3
1,430,568 - +0.2
1,430,704 + SMc01351 0.40 -0.5
1,430,733 + SMc01351 0.51 +0.2
1,430,753 - SMc01351 0.59 -0.8
1,430,861 + +0.7
1,430,877 - +0.4
1,431,004 + -0.7
1,431,004 + +0.2
1,431,005 - +0.2
1,431,005 - -0.6
1,431,008 + +1.4
1,431,008 + +1.0
1,431,008 + -0.7
1,431,008 + -2.9
1,431,008 + +0.9
1,431,008 + -1.0
1,431,120 + +0.3
1,432,775 + SMc01349 0.16 -0.0
1,432,775 + SMc01349 0.16 +0.0
1,432,788 - SMc01349 0.18 +0.4
1,432,788 - SMc01349 0.18 -0.2
1,432,967 + SMc01349 0.54 -0.8
1,432,967 + SMc01349 0.54 -2.2
1,432,967 + SMc01349 0.54 -0.1
1,432,967 + SMc01349 0.54 -0.7
1,432,968 - SMc01349 0.54 -0.8
1,432,968 - SMc01349 0.54 +0.0
1,432,968 - SMc01349 0.54 +1.3
1,432,968 - SMc01349 0.54 +1.4
1,432,968 - SMc01349 0.54 +0.4
1,433,614 + SMc01348 0.64 +1.4
1,433,615 - SMc01348 0.64 -0.1

Or see this region's nucleotide sequence