Strain Fitness in Sinorhizobium meliloti 1021 around SMc01236

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01237 and SMc01236 are separated by 895 nucleotidesSMc01236 and SMc01235 are separated by 89 nucleotides SMc01237: SMc01237 - ribonucleotide-diphosphate reductase subunit alpha, at 1,681,005 to 1,684,796 SMc01237 SMc01236: SMc01236 - hypothetical protein, at 1,685,692 to 1,686,495 SMc01236 SMc01235: SMc01235 - excinuclease ABC subunit A, at 1,686,585 to 1,689,506 SMc01235 Position (kb) 1685 1686 1687Strain fitness (log2 ratio) -3 -2 -1 0 1at 1685.192 kb on + strandat 1685.310 kb on - strandat 1685.445 kb on + strandat 1685.445 kb on + strandat 1685.453 kb on + strandat 1685.477 kb on + strandat 1685.493 kb on - strandat 1685.507 kb on + strandat 1685.930 kb on + strand, within SMc01236at 1685.931 kb on - strand, within SMc01236at 1685.931 kb on - strand, within SMc01236at 1686.344 kb on + strand, within SMc01236at 1686.345 kb on - strand, within SMc01236at 1686.347 kb on + strand, within SMc01236at 1686.348 kb on - strand, within SMc01236at 1686.348 kb on - strand, within SMc01236at 1686.653 kb on - strandat 1686.985 kb on + strand, within SMc01235at 1686.985 kb on + strand, within SMc01235at 1687.165 kb on + strand, within SMc01235at 1687.166 kb on - strand, within SMc01235at 1687.334 kb on - strand, within SMc01235at 1687.334 kb on - strand, within SMc01235at 1687.478 kb on - strand, within SMc01235

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,685,192 + -1.5
1,685,310 - +1.5
1,685,445 + +0.6
1,685,445 + +0.1
1,685,453 + +0.4
1,685,477 + +0.4
1,685,493 - -0.3
1,685,507 + -1.0
1,685,930 + SMc01236 0.30 -1.8
1,685,931 - SMc01236 0.30 -1.7
1,685,931 - SMc01236 0.30 -1.1
1,686,344 + SMc01236 0.81 -1.7
1,686,345 - SMc01236 0.81 -0.8
1,686,347 + SMc01236 0.81 -1.9
1,686,348 - SMc01236 0.82 -1.3
1,686,348 - SMc01236 0.82 +0.7
1,686,653 - -3.2
1,686,985 + SMc01235 0.14 -2.0
1,686,985 + SMc01235 0.14 -1.7
1,687,165 + SMc01235 0.20 -2.2
1,687,166 - SMc01235 0.20 -0.2
1,687,334 - SMc01235 0.26 -3.5
1,687,334 - SMc01235 0.26 -0.7
1,687,478 - SMc01235 0.31 -1.2

Or see this region's nucleotide sequence