Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01162 and SMc01161 overlap by 9 nucleotides SMc01161 and SMc01160 are separated by 142 nucleotides SMc01160 and SMc01159 overlap by 11 nucleotides
SMc01162: SMc01162 - hypothetical protein, at 388,470 to 389,285
SMc01162
SMc01161: SMc01161 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase, at 389,277 to 390,482
SMc01161
SMc01160: SMc01160 - hypothetical protein, at 390,625 to 391,083
SMc01160
SMc01159: SMc01159 - oxidoreductase, at 391,073 to 391,978
SMc01159
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 388.356 kb on - strand at 388.356 kb on - strand at 388.441 kb on - strand at 388.441 kb on - strand at 388.489 kb on - strand at 388.506 kb on + strand at 388.606 kb on + strand, within SMc01162 at 388.614 kb on + strand, within SMc01162 at 388.615 kb on - strand, within SMc01162 at 388.802 kb on + strand, within SMc01162 at 389.068 kb on - strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.098 kb on - strand, within SMc01162 at 389.128 kb on - strand, within SMc01162 at 390.526 kb on - strand at 390.651 kb on + strand at 390.762 kb on - strand, within SMc01160 at 390.878 kb on + strand, within SMc01160 at 391.121 kb on + strand at 391.121 kb on + strand at 391.482 kb on - strand, within SMc01159
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 388,356 - +0.5 388,356 - +1.3 388,441 - -0.3 388,441 - -1.3 388,489 - -0.4 388,506 + -0.2 388,606 + SMc01162 0.17 -1.6 388,614 + SMc01162 0.18 -1.9 388,615 - SMc01162 0.18 +0.0 388,802 + SMc01162 0.41 -0.1 389,068 - SMc01162 0.73 -0.8 389,097 + SMc01162 0.77 -0.8 389,097 + SMc01162 0.77 -1.9 389,098 - SMc01162 0.77 -2.7 389,128 - SMc01162 0.81 -0.2 390,526 - +1.7 390,651 + -3.0 390,762 - SMc01160 0.30 +1.1 390,878 + SMc01160 0.55 -0.3 391,121 + -1.5 391,121 + -1.0 391,482 - SMc01159 0.45 +0.4
Or see this region's nucleotide sequence