Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01114 and SMc01113 are separated by 16 nucleotides SMc01113 and SMc01112 are separated by 12 nucleotides SMc01112 and SMc01111 are separated by 153 nucleotides
SMc01114: SMc01114 - phoH-like protein, at 440,793 to 441,848
SMc01114
SMc01113: SMc01113 - hypothetical protein, at 441,865 to 442,371
SMc01113
SMc01112: SMc01112 - hypothetical protein, at 442,384 to 443,547
SMc01112
SMc01111: SMc01111 - apolipoprotein N-acyltransferase, at 443,701 to 445,296
SMc01111
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 441.423 kb on + strand, within SMc01114 at 441.798 kb on + strand at 441.798 kb on + strand at 442.370 kb on - strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.464 kb on + strand at 442.713 kb on + strand, within SMc01112 at 442.774 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.832 kb on - strand, within SMc01112 at 442.832 kb on - strand, within SMc01112
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 441,423 + SMc01114 0.60 -2.0 441,798 + -2.2 441,798 + -2.1 442,370 - +1.3 442,461 + +2.6 442,461 + +2.4 442,461 + +0.9 442,461 + +2.6 442,462 - +1.6 442,462 - +1.4 442,462 - +4.2 442,464 + +1.7 442,713 + SMc01112 0.28 +3.1 442,774 + SMc01112 0.34 +1.5 442,831 + SMc01112 0.38 +1.9 442,831 + SMc01112 0.38 +2.4 442,831 + SMc01112 0.38 +1.3 442,831 + SMc01112 0.38 -0.9 442,831 + SMc01112 0.38 +3.5 442,831 + SMc01112 0.38 -1.6 442,832 - SMc01112 0.38 -0.9 442,832 - SMc01112 0.38 +2.9
Or see this region's nucleotide sequence