Strain Fitness in Sinorhizobium meliloti 1021 around SMc01025

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01023 and SMc01024 are separated by 122 nucleotidesSMc01024 and SMc01025 are separated by 143 nucleotidesSMc01025 and SMc01026 are separated by 152 nucleotides SMc01023: SMc01023 - triosephosphate isomerase, at 1,548,277 to 1,549,047 SMc01023 SMc01024: SMc01024 - preprotein translocase subunit SecG, at 1,549,170 to 1,549,655 SMc01024 SMc01025: SMc01025 - CTP synthetase, at 1,549,799 to 1,551,427 SMc01025 SMc01026: SMc01026 - hypothetical protein, at 1,551,580 to 1,552,470 SMc01026 Position (kb) 1549 1550 1551 1552Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1548.908 kb on - strand, within SMc01023at 1549.018 kb on + strandat 1549.018 kb on + strandat 1549.019 kb on - strandat 1549.027 kb on + strandat 1549.027 kb on + strandat 1549.028 kb on - strandat 1549.028 kb on - strandat 1549.066 kb on + strandat 1549.444 kb on + strand, within SMc01024at 1549.625 kb on + strandat 1551.426 kb on - strandat 1551.748 kb on + strand, within SMc01026at 1551.748 kb on + strand, within SMc01026at 1551.749 kb on - strand, within SMc01026at 1552.168 kb on + strand, within SMc01026

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,548,908 - SMc01023 0.82 -3.9
1,549,018 + +0.0
1,549,018 + -0.2
1,549,019 - +0.4
1,549,027 + -0.9
1,549,027 + +0.2
1,549,028 - +0.4
1,549,028 - +0.7
1,549,066 + +1.1
1,549,444 + SMc01024 0.56 +0.9
1,549,625 + -0.1
1,551,426 - -2.5
1,551,748 + SMc01026 0.19 -1.2
1,551,748 + SMc01026 0.19 +0.4
1,551,749 - SMc01026 0.19 +1.9
1,552,168 + SMc01026 0.66 +1.2

Or see this region's nucleotide sequence