Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00983 and SMc00982 are separated by 637 nucleotides SMc00982 and SMc00981 are separated by 2 nucleotides
SMc00983: SMc00983 - hypothetical protein, at 953,846 to 954,439
SMc00983
SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321
SMc00982
SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418
SMc00981
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 954.096 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.304 kb on - strand, within SMc00983 at 954.421 kb on - strand at 954.424 kb on - strand at 954.490 kb on + strand at 954.522 kb on - strand at 954.642 kb on - strand at 954.642 kb on - strand at 954.665 kb on + strand at 954.665 kb on + strand at 954.731 kb on - strand at 954.761 kb on + strand at 955.128 kb on + strand at 955.129 kb on - strand at 955.164 kb on + strand at 955.165 kb on - strand at 955.165 kb on - strand at 955.194 kb on + strand at 955.248 kb on + strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.680 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.887 kb on + strand, within SMc00982 at 955.888 kb on - strand, within SMc00982 at 955.889 kb on + strand, within SMc00982 at 956.103 kb on + strand, within SMc00982 at 956.214 kb on + strand at 956.534 kb on + strand, within SMc00981 at 956.534 kb on + strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.536 kb on + strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.705 kb on + strand, within SMc00981 at 957.068 kb on + strand, within SMc00981
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 954,096 + SMc00983 0.42 +1.2 954,159 + SMc00983 0.53 +0.8 954,159 + SMc00983 0.53 +0.0 954,304 - SMc00983 0.77 +0.9 954,421 - -1.5 954,424 - -0.2 954,490 + +1.8 954,522 - -0.5 954,642 - +0.1 954,642 - -2.1 954,665 + +0.1 954,665 + -2.1 954,731 - -2.2 954,761 + -2.4 955,128 + -1.6 955,129 - -3.3 955,164 + -2.5 955,165 - -1.7 955,165 - -0.8 955,194 + -1.7 955,248 + SMc00982 0.14 -4.0 955,411 - SMc00982 0.27 -1.9 955,411 - SMc00982 0.27 -3.5 955,680 + SMc00982 0.48 -2.1 955,715 + SMc00982 0.51 -1.4 955,715 + SMc00982 0.51 -1.6 955,715 + SMc00982 0.51 -3.1 955,715 + SMc00982 0.51 -2.8 955,887 + SMc00982 0.65 -2.9 955,888 - SMc00982 0.65 -0.8 955,889 + SMc00982 0.65 -1.9 956,103 + SMc00982 0.82 +0.4 956,214 + -0.6 956,534 + SMc00981 0.19 -3.9 956,534 + SMc00981 0.19 -2.0 956,535 - SMc00981 0.19 -1.9 956,535 - SMc00981 0.19 -2.0 956,535 - SMc00981 0.19 -2.8 956,536 + SMc00981 0.19 -1.6 956,537 - SMc00981 0.19 -1.9 956,537 - SMc00981 0.19 -0.4 956,537 - SMc00981 0.19 -0.4 956,705 + SMc00981 0.35 -1.8 957,068 + SMc00981 0.68 -3.0
Or see this region's nucleotide sequence