Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00934 and SMc00891 overlap by 67 nucleotides SMc00891 and SMc00933 are separated by 218 nucleotides SMc00933 and SMc00932 are separated by 93 nucleotides
SMc00934: SMc00934 - transposase ISRM11/ISRM2011-2, at 891,571 to 892,176
SMc00934
SMc00891: SMc00891 - transposase ISRM11/ISRM2011-2, at 892,110 to 892,517
SMc00891
SMc00933: SMc00933 - hypothetical protein, at 892,736 to 892,969
SMc00933
SMc00932: SMc00932 - DNA mismatch repair protein, at 893,063 to 894,880
SMc00932
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 892.611 kb on + strand at 892.658 kb on + strand at 892.659 kb on - strand at 892.696 kb on - strand at 892.696 kb on - strand at 892.738 kb on - strand at 892.738 kb on - strand at 892.803 kb on + strand, within SMc00933 at 892.803 kb on + strand, within SMc00933 at 892.803 kb on + strand, within SMc00933 at 892.803 kb on + strand, within SMc00933 at 892.804 kb on - strand, within SMc00933 at 892.804 kb on - strand, within SMc00933 at 892.831 kb on - strand, within SMc00933 at 892.895 kb on + strand, within SMc00933 at 893.008 kb on + strand at 893.108 kb on + strand at 893.110 kb on + strand at 893.113 kb on - strand at 893.113 kb on - strand at 893.247 kb on + strand, within SMc00932 at 893.599 kb on + strand, within SMc00932 at 893.600 kb on - strand at 893.602 kb on - strand, within SMc00932 at 893.723 kb on + strand, within SMc00932
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 892,611 + +0.2 892,658 + +0.9 892,659 - -0.1 892,696 - +0.3 892,696 - -2.0 892,738 - -0.7 892,738 - -0.9 892,803 + SMc00933 0.29 +2.4 892,803 + SMc00933 0.29 +2.0 892,803 + SMc00933 0.29 +1.1 892,803 + SMc00933 0.29 +1.7 892,804 - SMc00933 0.29 +2.6 892,804 - SMc00933 0.29 +2.9 892,831 - SMc00933 0.41 +2.1 892,895 + SMc00933 0.68 +2.9 893,008 + +0.8 893,108 + -0.4 893,110 + -0.5 893,113 - +0.8 893,113 - +0.6 893,247 + SMc00932 0.10 -1.4 893,599 + SMc00932 0.29 -0.4 893,600 - +4.0 893,602 - SMc00932 0.30 -0.2 893,723 + SMc00932 0.36 -0.0
Or see this region's nucleotide sequence