Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00888 and SMc00887 overlap by 4 nucleotides SMc00887 and SMc00929 overlap by 25 nucleotides
SMc00888: SMc00888 - 2-component receiver domain-containing protein, at 895,248 to 896,984
SMc00888
SMc00887: SMc00887 - hypothetical protein, at 896,981 to 898,327
SMc00887
SMc00929: SMc00929 - transcriptional regulator, at 898,303 to 899,283
SMc00929
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 896.049 kb on + strand, within SMc00888 at 896.127 kb on + strand, within SMc00888 at 896.128 kb on - strand, within SMc00888 at 896.128 kb on - strand, within SMc00888 at 896.762 kb on + strand, within SMc00888 at 897.025 kb on + strand at 897.025 kb on + strand at 897.025 kb on + strand at 897.026 kb on - strand at 897.026 kb on - strand at 897.522 kb on - strand, within SMc00887 at 897.696 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 897.883 kb on - strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.077 kb on + strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.078 kb on - strand, within SMc00887 at 898.126 kb on + strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.127 kb on - strand, within SMc00887 at 898.247 kb on + strand at 898.247 kb on + strand at 898.254 kb on - strand at 898.289 kb on + strand at 898.290 kb on - strand at 898.448 kb on + strand, within SMc00929 at 898.449 kb on - strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.583 kb on + strand, within SMc00929 at 898.743 kb on + strand, within SMc00929 at 898.744 kb on - strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.745 kb on + strand, within SMc00929 at 898.746 kb on - strand, within SMc00929 at 898.799 kb on + strand, within SMc00929
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 896,049 + SMc00888 0.46 -0.9 896,127 + SMc00888 0.51 +0.4 896,128 - SMc00888 0.51 -0.9 896,128 - SMc00888 0.51 +0.5 896,762 + SMc00888 0.87 -0.4 897,025 + -0.5 897,025 + -0.4 897,025 + +0.6 897,026 - +0.4 897,026 - +0.0 897,522 - SMc00887 0.40 -0.8 897,696 - SMc00887 0.53 -0.1 897,883 - SMc00887 0.67 -1.3 897,883 - SMc00887 0.67 +0.3 898,077 + SMc00887 0.81 +0.2 898,077 + SMc00887 0.81 -1.4 898,078 - SMc00887 0.81 -0.8 898,078 - SMc00887 0.81 -1.1 898,126 + SMc00887 0.85 -0.5 898,127 - SMc00887 0.85 -2.0 898,127 - SMc00887 0.85 -2.1 898,127 - SMc00887 0.85 -1.7 898,247 + -1.4 898,247 + -3.4 898,254 - +0.1 898,289 + +0.7 898,290 - +0.9 898,448 + SMc00929 0.15 -2.0 898,449 - SMc00929 0.15 -1.1 898,583 + SMc00929 0.29 -0.3 898,583 + SMc00929 0.29 -0.9 898,583 + SMc00929 0.29 -0.5 898,743 + SMc00929 0.45 +1.4 898,744 - SMc00929 0.45 +1.8 898,745 + SMc00929 0.45 -0.6 898,745 + SMc00929 0.45 -0.5 898,746 - SMc00929 0.45 -0.5 898,799 + SMc00929 0.51 -1.0
Or see this region's nucleotide sequence