Strain Fitness in Sinorhizobium meliloti 1021 around SMc00859

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00860 and SMc00859 are separated by 107 nucleotidesSMc00859 and SMc00858 overlap by 32 nucleotidesSMc00858 and SMc00857 are separated by 138 nucleotides SMc00860: SMc00860 - octaprenyl-diphosphate synthase, at 927,505 to 928,521 SMc00860 SMc00859: SMc00859 - hypothetical protein, at 928,629 to 928,850 SMc00859 SMc00858: SMc00858 - hypothetical protein, at 928,819 to 929,655 SMc00858 SMc00857: SMc00857 - protease, at 929,794 to 930,660 SMc00857 Position (kb) 928 929Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 928.607 kb on + strandat 928.608 kb on - strandat 928.608 kb on - strandat 928.621 kb on - strandat 928.735 kb on + strand, within SMc00859at 928.736 kb on - strand, within SMc00859at 928.736 kb on - strand, within SMc00859at 929.471 kb on + strand, within SMc00858at 929.642 kb on - strandat 929.664 kb on - strandat 929.696 kb on + strandat 929.696 kb on + strandat 929.697 kb on - strandat 929.697 kb on - strandat 929.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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928,607 + -0.9
928,608 - -4.0
928,608 - -2.1
928,621 - -1.8
928,735 + SMc00859 0.48 -1.2
928,736 - SMc00859 0.48 -2.3
928,736 - SMc00859 0.48 -0.2
929,471 + SMc00858 0.78 -2.4
929,642 - -3.3
929,664 - -2.7
929,696 + +0.8
929,696 + -0.8
929,697 - -2.9
929,697 - -3.2
929,764 - -2.2

Or see this region's nucleotide sequence