Strain Fitness in Sinorhizobium meliloti 1021 around SMc00856

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00857 and SMc00856 are separated by 140 nucleotidesSMc00856 and SMc00855 are separated by 126 nucleotides SMc00857: SMc00857 - protease, at 929,794 to 930,660 SMc00857 SMc00856: SMc00856 - hypothetical protein, at 930,801 to 930,992 SMc00856 SMc00855: SMc00855 - glycyl-tRNA synthetase subunit alpha, at 931,119 to 932,054 SMc00855 Position (kb) 930 931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 930.024 kb on + strand, within SMc00857at 930.024 kb on + strand, within SMc00857at 930.024 kb on + strand, within SMc00857at 930.028 kb on + strand, within SMc00857at 930.109 kb on + strand, within SMc00857at 930.109 kb on + strand, within SMc00857at 930.110 kb on - strand, within SMc00857at 930.110 kb on - strand, within SMc00857at 930.238 kb on + strand, within SMc00857at 930.967 kb on - strand, within SMc00856

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
930,024 + SMc00857 0.27 -0.3
930,024 + SMc00857 0.27 -1.6
930,024 + SMc00857 0.27 -2.1
930,028 + SMc00857 0.27 -2.0
930,109 + SMc00857 0.36 -2.5
930,109 + SMc00857 0.36 -4.3
930,110 - SMc00857 0.36 -1.9
930,110 - SMc00857 0.36 -1.6
930,238 + SMc00857 0.51 -2.2
930,967 - SMc00856 0.86 -1.5

Or see this region's nucleotide sequence