Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00779 and SMc00780 are separated by 71 nucleotides SMc00780 and SMc00781 are separated by 115 nucleotides
SMc00779: SMc00779 - FAD-dependent oxidoreductase, at 799,009 to 800,247
SMc00779
SMc00780: SMc00780 - transcriptional regulator, at 800,319 to 801,200
SMc00780
SMc00781: SMc00781 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) <small>(from data)</small>, at 801,316 to 802,812
SMc00781
Position (kb) 800
801
802 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 799.372 kb on - strand, within SMc00779 at 799.442 kb on + strand, within SMc00779 at 799.564 kb on + strand, within SMc00779 at 799.564 kb on + strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.565 kb on - strand, within SMc00779 at 799.566 kb on + strand, within SMc00779 at 799.567 kb on - strand, within SMc00779 at 799.690 kb on + strand, within SMc00779 at 799.691 kb on - strand, within SMc00779 at 799.692 kb on - strand, within SMc00779 at 799.810 kb on + strand, within SMc00779 at 799.811 kb on - strand, within SMc00779 at 799.826 kb on - strand, within SMc00779 at 799.826 kb on - strand, within SMc00779 at 799.837 kb on + strand, within SMc00779 at 799.837 kb on + strand, within SMc00779 at 799.838 kb on - strand, within SMc00779 at 799.838 kb on - strand, within SMc00779 at 799.932 kb on + strand, within SMc00779 at 799.932 kb on + strand, within SMc00779 at 799.933 kb on - strand at 799.945 kb on + strand, within SMc00779 at 800.050 kb on + strand, within SMc00779 at 800.155 kb on + strand at 800.410 kb on + strand, within SMc00780 at 800.410 kb on + strand, within SMc00780 at 800.411 kb on - strand, within SMc00780 at 800.457 kb on + strand, within SMc00780 at 800.458 kb on - strand, within SMc00780 at 800.458 kb on - strand, within SMc00780 at 800.483 kb on + strand, within SMc00780 at 800.483 kb on + strand, within SMc00780 at 800.485 kb on + strand, within SMc00780 at 800.486 kb on - strand, within SMc00780 at 800.486 kb on - strand, within SMc00780 at 800.630 kb on - strand, within SMc00780 at 800.693 kb on - strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.720 kb on + strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.721 kb on - strand, within SMc00780 at 800.722 kb on + strand, within SMc00780 at 800.723 kb on - strand, within SMc00780 at 800.723 kb on - strand, within SMc00780 at 801.178 kb on - strand at 801.273 kb on - strand at 801.319 kb on + strand at 801.319 kb on + strand at 801.319 kb on + strand at 801.320 kb on - strand at 801.320 kb on - strand at 801.715 kb on + strand, within SMc00781 at 801.715 kb on + strand, within SMc00781 at 801.715 kb on + strand, within SMc00781 at 801.783 kb on + strand, within SMc00781 at 801.783 kb on + strand, within SMc00781 at 801.783 kb on + strand, within SMc00781 at 801.981 kb on + strand, within SMc00781 at 802.010 kb on - strand, within SMc00781 at 802.135 kb on + strand, within SMc00781
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 799,372 - SMc00779 0.29 -1.5 799,442 + SMc00779 0.35 +0.2 799,564 + SMc00779 0.45 +0.1 799,564 + SMc00779 0.45 -0.4 799,565 - SMc00779 0.45 -0.5 799,565 - SMc00779 0.45 -0.6 799,565 - SMc00779 0.45 +0.2 799,565 - SMc00779 0.45 -0.2 799,565 - SMc00779 0.45 +0.1 799,566 + SMc00779 0.45 -0.3 799,567 - SMc00779 0.45 -0.4 799,690 + SMc00779 0.55 -1.5 799,691 - SMc00779 0.55 +1.9 799,692 - SMc00779 0.55 +1.0 799,810 + SMc00779 0.65 -1.4 799,811 - SMc00779 0.65 -0.2 799,826 - SMc00779 0.66 +0.7 799,826 - SMc00779 0.66 -1.6 799,837 + SMc00779 0.67 -1.1 799,837 + SMc00779 0.67 +1.4 799,838 - SMc00779 0.67 +0.7 799,838 - SMc00779 0.67 -0.6 799,932 + SMc00779 0.74 +1.5 799,932 + SMc00779 0.74 +0.5 799,933 - +0.4 799,945 + SMc00779 0.76 -1.2 800,050 + SMc00779 0.84 -0.2 800,155 + -0.1 800,410 + SMc00780 0.10 -1.0 800,410 + SMc00780 0.10 +0.5 800,411 - SMc00780 0.10 -0.6 800,457 + SMc00780 0.16 +0.8 800,458 - SMc00780 0.16 -1.1 800,458 - SMc00780 0.16 -0.1 800,483 + SMc00780 0.19 -0.5 800,483 + SMc00780 0.19 -3.9 800,485 + SMc00780 0.19 -1.8 800,486 - SMc00780 0.19 -2.0 800,486 - SMc00780 0.19 +1.6 800,630 - SMc00780 0.35 -0.8 800,693 - SMc00780 0.42 -0.4 800,720 + SMc00780 0.45 +0.0 800,720 + SMc00780 0.45 +0.2 800,720 + SMc00780 0.45 -0.5 800,721 - SMc00780 0.46 +0.2 800,721 - SMc00780 0.46 +1.0 800,721 - SMc00780 0.46 +0.2 800,721 - SMc00780 0.46 +0.1 800,722 + SMc00780 0.46 -0.1 800,723 - SMc00780 0.46 -0.4 800,723 - SMc00780 0.46 -0.4 801,178 - -1.0 801,273 - -0.2 801,319 + -0.2 801,319 + -0.2 801,319 + +1.3 801,320 - +2.9 801,320 - +0.3 801,715 + SMc00781 0.27 -1.0 801,715 + SMc00781 0.27 -0.9 801,715 + SMc00781 0.27 -0.4 801,783 + SMc00781 0.31 -1.7 801,783 + SMc00781 0.31 -0.2 801,783 + SMc00781 0.31 -0.8 801,981 + SMc00781 0.44 -0.1 802,010 - SMc00781 0.46 -1.7 802,135 + SMc00781 0.55 +0.2
Or see this region's nucleotide sequence