Strain Fitness in Sinorhizobium meliloti 1021 around SMc00772

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00771 and SMc00772 are separated by 4 nucleotidesSMc00772 and SMc00773 are separated by 3 nucleotides SMc00771: SMc00771 - putrescine ABC transporter ATP-binding protein, at 784,466 to 785,611 SMc00771 SMc00772: SMc00772 - putrescine ABC transporter permease, at 785,616 to 786,527 SMc00772 SMc00773: SMc00773 - putrescine ABC transporter permease, at 786,531 to 787,352 SMc00773 Position (kb) 785 786 787Strain fitness (log2 ratio) -1 0 1 2 3 4at 784.759 kb on + strand, within SMc00771at 784.759 kb on + strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.760 kb on - strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 784.775 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.189 kb on + strand, within SMc00771at 785.241 kb on + strand, within SMc00771at 785.242 kb on - strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.276 kb on + strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.277 kb on - strand, within SMc00771at 785.280 kb on + strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.437 kb on - strand, within SMc00771at 785.598 kb on + strandat 785.598 kb on + strandat 785.656 kb on + strandat 785.656 kb on + strandat 785.656 kb on + strandat 785.657 kb on - strandat 785.668 kb on - strandat 785.668 kb on - strandat 785.668 kb on - strandat 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.754 kb on + strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.755 kb on - strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.756 kb on + strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.757 kb on - strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.829 kb on + strand, within SMc00772at 785.830 kb on - strand, within SMc00772at 785.857 kb on - strand, within SMc00772at 785.857 kb on - strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.868 kb on + strand, within SMc00772at 785.869 kb on - strand, within SMc00772at 785.869 kb on - strand, within SMc00772at 785.938 kb on - strand, within SMc00772at 786.027 kb on + strand, within SMc00772at 786.028 kb on - strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.135 kb on + strand, within SMc00772at 786.136 kb on - strand, within SMc00772at 786.156 kb on + strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.157 kb on - strand, within SMc00772at 786.473 kb on - strandat 786.483 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.530 kb on + strandat 786.531 kb on - strandat 786.588 kb on + strandat 786.588 kb on + strandat 786.589 kb on - strandat 786.796 kb on - strand, within SMc00773at 786.837 kb on + strand, within SMc00773at 786.837 kb on + strand, within SMc00773at 786.837 kb on + strand, within SMc00773at 786.838 kb on - strand, within SMc00773at 786.838 kb on - strand, within SMc00773at 786.838 kb on - strand, within SMc00773at 786.838 kb on - strand, within SMc00773at 786.941 kb on + strand, within SMc00773at 787.191 kb on + strand, within SMc00773at 787.191 kb on + strand, within SMc00773at 787.191 kb on + strand, within SMc00773at 787.192 kb on - strand, within SMc00773at 787.192 kb on - strand, within SMc00773at 787.384 kb on - strandat 787.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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784,759 + SMc00771 0.26 +0.7
784,759 + SMc00771 0.26 -0.0
784,760 - SMc00771 0.26 -0.2
784,760 - SMc00771 0.26 +1.6
784,775 + SMc00771 0.27 -1.2
784,775 + SMc00771 0.27 +1.0
785,189 + SMc00771 0.63 +1.0
785,189 + SMc00771 0.63 +1.5
785,241 + SMc00771 0.68 +4.1
785,242 - SMc00771 0.68 -0.4
785,276 + SMc00771 0.71 +2.4
785,276 + SMc00771 0.71 -0.1
785,277 - SMc00771 0.71 +1.1
785,277 - SMc00771 0.71 +1.1
785,277 - SMc00771 0.71 +1.2
785,277 - SMc00771 0.71 +0.9
785,280 + SMc00771 0.71 +0.9
785,437 - SMc00771 0.85 +0.7
785,437 - SMc00771 0.85 -1.3
785,437 - SMc00771 0.85 +0.3
785,598 + +1.3
785,598 + +1.0
785,656 + +1.2
785,656 + +0.8
785,656 + +0.6
785,657 - -0.5
785,668 - +2.4
785,668 - +1.4
785,668 - +1.2
785,754 + SMc00772 0.15 +2.2
785,754 + SMc00772 0.15 +1.0
785,754 + SMc00772 0.15 +0.4
785,754 + SMc00772 0.15 -1.3
785,754 + SMc00772 0.15 +0.3
785,755 - SMc00772 0.15 +1.2
785,755 - SMc00772 0.15 +0.4
785,755 - SMc00772 0.15 +1.4
785,755 - SMc00772 0.15 +1.4
785,755 - SMc00772 0.15 +3.1
785,755 - SMc00772 0.15 +0.2
785,755 - SMc00772 0.15 +0.3
785,755 - SMc00772 0.15 +0.9
785,755 - SMc00772 0.15 +0.0
785,755 - SMc00772 0.15 +1.2
785,756 + SMc00772 0.15 -0.4
785,756 + SMc00772 0.15 -0.1
785,756 + SMc00772 0.15 +0.6
785,756 + SMc00772 0.15 +0.9
785,756 + SMc00772 0.15 +1.4
785,756 + SMc00772 0.15 +1.4
785,756 + SMc00772 0.15 +0.9
785,757 - SMc00772 0.15 -1.2
785,757 - SMc00772 0.15 +2.4
785,757 - SMc00772 0.15 +1.2
785,757 - SMc00772 0.15 +1.0
785,757 - SMc00772 0.15 +1.3
785,829 + SMc00772 0.23 +0.6
785,829 + SMc00772 0.23 -0.2
785,829 + SMc00772 0.23 +1.3
785,829 + SMc00772 0.23 +0.8
785,829 + SMc00772 0.23 +0.4
785,830 - SMc00772 0.23 -1.6
785,857 - SMc00772 0.26 +0.7
785,857 - SMc00772 0.26 +0.4
785,868 + SMc00772 0.28 +1.1
785,868 + SMc00772 0.28 -0.4
785,868 + SMc00772 0.28 -0.4
785,868 + SMc00772 0.28 +2.2
785,868 + SMc00772 0.28 +0.5
785,868 + SMc00772 0.28 +2.2
785,868 + SMc00772 0.28 +2.1
785,868 + SMc00772 0.28 +1.3
785,869 - SMc00772 0.28 +2.2
785,869 - SMc00772 0.28 +0.5
785,938 - SMc00772 0.35 +0.0
786,027 + SMc00772 0.45 +0.3
786,028 - SMc00772 0.45 +1.3
786,135 + SMc00772 0.57 +0.8
786,135 + SMc00772 0.57 +1.8
786,135 + SMc00772 0.57 +0.9
786,135 + SMc00772 0.57 -1.5
786,135 + SMc00772 0.57 +0.5
786,135 + SMc00772 0.57 +3.0
786,136 - SMc00772 0.57 -0.2
786,156 + SMc00772 0.59 +1.1
786,157 - SMc00772 0.59 +0.5
786,157 - SMc00772 0.59 +1.9
786,157 - SMc00772 0.59 +1.3
786,157 - SMc00772 0.59 +0.8
786,473 - +0.9
786,483 + +1.2
786,530 + +1.0
786,530 + +0.9
786,530 + +0.7
786,530 + +0.4
786,531 - +1.0
786,588 + +1.2
786,588 + +2.0
786,589 - -0.4
786,796 - SMc00773 0.32 +2.6
786,837 + SMc00773 0.37 +1.1
786,837 + SMc00773 0.37 +1.2
786,837 + SMc00773 0.37 +1.6
786,838 - SMc00773 0.37 +0.0
786,838 - SMc00773 0.37 -1.5
786,838 - SMc00773 0.37 -0.8
786,838 - SMc00773 0.37 +1.8
786,941 + SMc00773 0.50 +0.4
787,191 + SMc00773 0.80 +0.5
787,191 + SMc00773 0.80 -0.2
787,191 + SMc00773 0.80 +0.8
787,192 - SMc00773 0.80 -0.4
787,192 - SMc00773 0.80 +1.2
787,384 - +0.8
787,384 - -0.6

Or see this region's nucleotide sequence