Strain Fitness in Sinorhizobium meliloti 1021 around SMc00737

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00759 and SMc00738 are separated by 318 nucleotidesSMc00738 and SMc00737 are separated by 31 nucleotidesSMc00737 and SMc00736 are separated by 105 nucleotidesSMc00736 and SMc00735 are separated by 152 nucleotides SMc00759: SMc00759 - tRNA-Leu, at 2,843,541 to 2,843,625 SMc00759 SMc00738: SMc00738 - hypothetical protein, at 2,843,944 to 2,844,453 SMc00738 SMc00737: SMc00737 - hypothetical protein, at 2,844,485 to 2,845,042 SMc00737 SMc00736: SMc00736 - DNA-3-methyladenine DNA glycosylase, at 2,845,148 to 2,845,795 SMc00736 SMc00735: SMc00735 - glutamyl-Q tRNA(Asp) synthetase, at 2,845,948 to 2,846,844 SMc00735 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -1 0 1 2 3 4at 2843.770 kb on + strandat 2843.771 kb on - strandat 2843.850 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strandat 2844.451 kb on + strandat 2844.487 kb on - strandat 2844.516 kb on + strandat 2844.517 kb on - strandat 2844.566 kb on - strand, within SMc00737at 2844.594 kb on + strand, within SMc00737at 2844.595 kb on - strand, within SMc00737at 2844.597 kb on - strand, within SMc00737at 2844.756 kb on + strand, within SMc00737at 2844.756 kb on + strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strandat 2844.985 kb on + strand, within SMc00737at 2844.988 kb on - strandat 2845.079 kb on + strandat 2845.079 kb on + strandat 2845.081 kb on + strandat 2845.082 kb on - strandat 2845.084 kb on + strandat 2845.084 kb on + strandat 2845.085 kb on - strandat 2845.129 kb on - strandat 2845.129 kb on - strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.194 kb on + strandat 2845.195 kb on - strandat 2845.206 kb on - strandat 2845.368 kb on + strand, within SMc00736at 2845.368 kb on + strand, within SMc00736at 2845.369 kb on - strand, within SMc00736at 2845.369 kb on - strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.649 kb on + strand, within SMc00736at 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.766 kb on + strandat 2845.767 kb on - strandat 2845.767 kb on - strandat 2845.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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2,843,770 + -0.9
2,843,771 - -0.0
2,843,850 + +2.0
2,843,871 + +0.6
2,843,871 + +0.5
2,843,871 + -0.1
2,844,451 + -1.1
2,844,487 - -0.9
2,844,516 + +4.1
2,844,517 - +2.4
2,844,566 - SMc00737 0.15 +1.9
2,844,594 + SMc00737 0.20 +1.8
2,844,595 - SMc00737 0.20 +2.5
2,844,597 - SMc00737 0.20 +1.5
2,844,756 + SMc00737 0.49 -0.6
2,844,756 + SMc00737 0.49 +1.7
2,844,829 - SMc00737 0.62 +1.7
2,844,829 - SMc00737 0.62 +2.0
2,844,829 - SMc00737 0.62 +2.0
2,844,829 - +1.4
2,844,985 + SMc00737 0.90 +1.7
2,844,988 - +2.1
2,845,079 + -0.3
2,845,079 + +1.3
2,845,081 + +1.3
2,845,082 - +0.3
2,845,084 + -0.0
2,845,084 + +1.6
2,845,085 - +1.1
2,845,129 - +0.8
2,845,129 - -0.2
2,845,191 + -0.5
2,845,191 + -0.1
2,845,191 + -0.6
2,845,191 + -0.3
2,845,194 + -0.8
2,845,195 - -0.1
2,845,206 - +0.2
2,845,368 + SMc00736 0.34 -0.2
2,845,368 + SMc00736 0.34 +0.6
2,845,369 - SMc00736 0.34 +0.1
2,845,369 - SMc00736 0.34 -1.1
2,845,649 + SMc00736 0.77 +0.6
2,845,649 + SMc00736 0.77 +1.2
2,845,649 + SMc00736 0.77 +0.8
2,845,766 + -0.3
2,845,766 + +0.8
2,845,766 + +0.5
2,845,766 + -0.2
2,845,766 + +0.8
2,845,766 + +0.3
2,845,767 - +0.4
2,845,767 - +0.2
2,845,821 - -0.1

Or see this region's nucleotide sequence